View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_high_22 (Length: 311)
Name: NF19453_high_22
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_high_22 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 45730795 - 45731120
Alignment:
| Q |
1 |
gggttctgtcacgcatttgaagtttaagtggttaggaattgtggaagatatggttttctacacctttaagtcaatgtcttagtctattcaaattaatctt |
100 |
Q |
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| T |
45730795 |
gggttctgtcacgcatttgaagtttaagtggttaggaattgtggaagat--ggtttcctacacctttaagtcaatgtcttagtctattcaaattaatctt |
45730892 |
T |
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| Q |
101 |
gttatatggcatcattaccaaatcaagttattttaaccagcggtta------------gacagataattacaacacgtatcgcaatgtgaattataacat |
188 |
Q |
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| T |
45730893 |
gttatatggcatcattaccaaatcaagttattttaaccagcggttagtgaaataaaacgacagataattacaacacgtaacgcaatgtgaattataacat |
45730992 |
T |
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| Q |
189 |
gcaaagaatgaatactgttcccctccaaatggaaaaggcaaata------cgtgaactttataatgtacataaagagtattcaacttctctttgcctaaa |
282 |
Q |
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| T |
45730993 |
acaaagaatgaatactgttcccctccaaatggaaaaggcaagtatactaccgtgaactttataatgtacat-aagagtattcaacttctctttccctaaa |
45731091 |
T |
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| Q |
283 |
agaaacagttgccactagggattatgttc |
311 |
Q |
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| T |
45731092 |
agaaatagttgccactagggattatgttc |
45731120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 45736389 - 45736520
Alignment:
| Q |
2 |
ggttctgtcacgcatttgaagtttaagtggttaggaattgtggaagata-tggttttctacacctttaagtcaatgtcttagtctattcaaattaatctt |
100 |
Q |
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| T |
45736389 |
ggttctgtcactcatttgaagtgtaagtggttaggaattgtggaagatagtggttttctacacatttaagtcaatgtcttagtctattcaaattaatctt |
45736488 |
T |
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| Q |
101 |
gttatatggcatcattaccaaatcaagttatt |
132 |
Q |
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| T |
45736489 |
attatatgtcatcagtactaaatcgagttatt |
45736520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 45736516 - 45736566
Alignment:
| Q |
180 |
ttataacatgcaaagaatgaatactgttcccctccaaatggaaaaggcaaa |
230 |
Q |
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| T |
45736516 |
ttattacatacaaagaatgaatactgctcccctcaaaatggaaagggcaaa |
45736566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 45736578 - 45736606
Alignment:
| Q |
257 |
gagtattcaacttctctttgcctaaaaga |
285 |
Q |
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| T |
45736578 |
gagtattcaacttctctttgcctaaaaga |
45736606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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