View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19453_high_27 (Length: 270)
Name: NF19453_high_27
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_high_27 |
 | |
|
| [»] scaffold1149 (1 HSPs) |
| | |
|
| [»] scaffold0107 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1149 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold1149
Description:
Target: scaffold1149; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 1200 - 1440
Alignment:
| Q |
1 |
ttaaggtgttgtaaaaaatgcttcataaaattagaatcattggtaaatgtcacttaagtacattaaagtgtcatgtttgtccctttatcacgctgagtaa |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1200 |
ttaaggtgttgtaaaaaatccttcataaaattaaaatcattggtaaatgtcacttaagtacattaaagtgtcatgtttgtccctttagcacgctgagtaa |
1299 |
T |
|
| Q |
101 |
gg-gataattataaaaaacttaccaatcaaaccaattcattcttattttacaaatattccattattttgtaacctgtcatggaagaaaagggataatnnn |
199 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1300 |
agagataattgtaaaaaacttaccaatcaaaccaattcattcttattttacaaatattccattattttgtaacctgtcatggaagaaaagggataataaa |
1399 |
T |
|
| Q |
200 |
nnnngagtattaatattattgaatttcatgtgagccctatg |
240 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
1400 |
aaaagagtattaatattattgaattacatgtgatccctatg |
1440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 16235558 - 16235320
Alignment:
| Q |
1 |
ttaaggtgttgtaaaaaatgcttcataaaattagaatcattggtaaatgtcacttaagtacattaaagtgtcatgtttgtccctttatcacgctgagt-a |
99 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
16235558 |
ttaaggtgttgtaaaaaatccttcataaaattagaatcattggtaaatgtcacttaagtacattaaagtgtcatgtttgtccctttagcacgctgagtaa |
16235459 |
T |
|
| Q |
100 |
agggataattataaaaaacttaccaatcaaaccaattcattcttattttacaaatattccattattttgtaacctgtcatggaagaaaagggataatnnn |
199 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16235458 |
agagataattgtaaaaaacttaccaatcaaaccaattcattcttattttacaaatattccattattttgtaacctgtcatggaagaaaagggataat--a |
16235361 |
T |
|
| Q |
200 |
nnnngagtattaatattattgaatttcatgtgagccctatg |
240 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
16235360 |
aaaagagtattaatattattgaattacatgtgatccctatg |
16235320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 10980782 - 10980846
Alignment:
| Q |
21 |
cttcataaaattagaatcattggtaaatgtcacttaagtacattaaagtgtcatgtttgtccctt |
85 |
Q |
| |
|
||||||||||||| ||| ||| |||| ||| |||||||| ||||| ||||| |||||||||||| |
|
|
| T |
10980782 |
cttcataaaattataataattattaaaagtctcttaagtatattaatgtgtcgtgtttgtccctt |
10980846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 33824 - 33911
Alignment:
| Q |
13 |
aaaaaatgcttcataaaattagaatcattggtaaatgtcacttaagtacattaaagtgtcatgtttgtccctttatcacgctgagtaa |
100 |
Q |
| |
|
||||||| |||| ||||||||||||||||| ||||| || |||||||| | ||||||| || |||||||||||| ||| || ||||| |
|
|
| T |
33824 |
aaaaaatccttcctaaaattagaatcattgttaaatatctcttaagtataacaaagtgttatttttgtccctttagcacccttagtaa |
33911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 3067244 - 3067151
Alignment:
| Q |
8 |
gttgtaaaaaatgcttcataaaattagaatcattggtaaatgtcacttaagtacattaaagtgtcatgtttgtccctttatcacgctgagtaag |
101 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||||| |||||||| ||||||||||| | |||| || |||||||||||| ||| || |||||| |
|
|
| T |
3067244 |
gttgtaaaaaatccttcctaaaattgaaatcattattaaatgtctcttaagtacatcattgtgttatttttgtccctttaacacacttagtaag |
3067151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 12731680 - 12731754
Alignment:
| Q |
13 |
aaaaaatgcttcataaaattagaatcattggtaaatgtcacttaagtacattaaagtgtcatgtttgtcccttta |
87 |
Q |
| |
|
||||||| |||| ||||||||||||||||| ||||| || | |||||| | ||||||| || |||||||||||| |
|
|
| T |
12731680 |
aaaaaatccttcctaaaattagaatcattgttaaatatctcctaagtataacaaagtgttatttttgtcccttta |
12731754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 28556063 - 28556126
Alignment:
| Q |
110 |
ataaaaaacttaccaatcaaaccaattcattcttattttacaaatattccattattttgtaacct |
174 |
Q |
| |
|
||||||||||||||||||| | |||||||| ||||||| ||| | |||||||||||| |||||| |
|
|
| T |
28556063 |
ataaaaaacttaccaatcataaaaattcatttttatttttcaagt-ttccattattttataacct |
28556126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University