View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_high_38 (Length: 236)
Name: NF19453_high_38
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_high_38 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 37993925 - 37994147
Alignment:
| Q |
14 |
catattcaacctccctttcctcttatacctcactctcatgaacacacccaacctcgtcggaactatccctccctccatatccaacctcaccaaactcaat |
113 |
Q |
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| T |
37993925 |
catattcaacctccctttcctcttatacctcactctcatgaacacacccaacctcgtcggaactatccctccctccatatccaacctcaccaaactcaat |
37994024 |
T |
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| Q |
114 |
tccatctacatcatccaaaccaacatctccggcgagatacctaacactctctcagagatcaaaaccctagtaagcatcgacatcagcgacaacaaactca |
213 |
Q |
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| T |
37994025 |
tccatctacatcatccaaaccaacatctccggcgagatacctaacactctctcagagatcaaaaccctagtaaccatcgacatcagcgacaacaaactca |
37994124 |
T |
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| Q |
214 |
ctggtcccctccctgcatcactc |
236 |
Q |
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| T |
37994125 |
ctggtcccctccccgcatcactc |
37994147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 76 - 236
Target Start/End: Original strand, 37989803 - 37989963
Alignment:
| Q |
76 |
ctatccctccctccatatccaacctcaccaaactcaattccatctacatcatccaaaccaacatctccggcgagatacctaacactctctcagagatcaa |
175 |
Q |
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| T |
37989803 |
ctatccctccttccatctccaaactctccaaactcaattatatctacatcatccaaaccaacatctccggggagataccttacactctctcacagatcaa |
37989902 |
T |
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| Q |
176 |
aaccctagtaagcatcgacatcagcgacaacaaactcactggtcccctccctgcatcactc |
236 |
Q |
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| T |
37989903 |
aacactagtaaccatctccttcaatagcaacaaactcaccggtcccctccccgcttcactc |
37989963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 37697509 - 37697405
Alignment:
| Q |
132 |
accaacatctccggcgagatacctaacactctctcagagatcaaaaccctagtaagcatcgacatcagcgacaacaaactcactggtcccctccctgcat |
231 |
Q |
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| T |
37697509 |
accagcatctccggcgagataccaaacactctttcaaatatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctgctt |
37697410 |
T |
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| Q |
232 |
cactc |
236 |
Q |
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||||| |
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| T |
37697409 |
cactc |
37697405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 38013577 - 38013671
Alignment:
| Q |
132 |
accaacatctccggcgagatacctaacactctctcagagatcaaaaccctagtaagcatcgacatcagcgacaacaaactcactggtcccctccc |
226 |
Q |
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| T |
38013577 |
accaacatctccggcgagataccaaacaccctctcacagatcaaaacgctcttacgcatcgacttctacaacaacaaactaactggtcccctccc |
38013671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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