View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_high_5 (Length: 495)
Name: NF19453_high_5
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 49215732 - 49216216
Alignment:
| Q |
1 |
accatgtctcaaatccatattactattttccaaaatgttgattacattgacatgggcaaacaccataaacgttagaaatagaattgtgcttacgtcttcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49215732 |
accatgtctcaaatccatattactattttccaaaatgttgattacattgacatgggcaaacaccataaacgttagaaatagaattgtgcttacgtcttcg |
49215831 |
T |
|
| Q |
101 |
actgtgcagtacctgtctattatttagtacagcttaagtttaattactacggtccaatttaaatacaactagtgtttaaatactaagatcctgctctcga |
200 |
Q |
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| T |
49215832 |
actgtgcagtacctgtctattatttagtacagcttatgtttaattagtacggtccaatttaaatacaactagtgtttaaatactaagatcctgctctcga |
49215931 |
T |
|
| Q |
201 |
gcggctactaatcagtaaactacgagttgcacacaacaataaacaataaattctgaaaaattcatatgaagataacaaaaacaaatcaaggcattggcat |
300 |
Q |
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| T |
49215932 |
gcggctactaatcagtaaactacgagttgcacacaacaataagcaataaattctgaaaaattcatatgaagataacaaaaacaaatcaaggcattggcat |
49216031 |
T |
|
| Q |
301 |
accttatcaagtttgtgaaaagaatcggcccttcgaggcgtcaatccatgtatggcttctccagcaaccttggaaagccaagatggccacccagcagcca |
400 |
Q |
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| T |
49216032 |
accttatcaagtttgtgaaaagaatcggcccttcgaggcgtcaatccatgtatggcttctccagcaaccttggaaagccaagatggccacccagcagcca |
49216131 |
T |
|
| Q |
401 |
cttgttcaccatgtatatggttaggtggattgctcaattttggattagccttcaaagattgcctcctctctctccttgccctttg |
485 |
Q |
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| T |
49216132 |
cttgttcaccatgtatatggttaggtggattgctcaattttggattagccttcaaagattgcctcctctctctccttgccctttg |
49216216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 459
Target Start/End: Complemental strand, 6700236 - 6700119
Alignment:
| Q |
342 |
caatccatgtatggcttctccagcaaccttggaaagccaagatggccacccagcagccacttgttcaccatgtatatggttaggtggattgctcaatttt |
441 |
Q |
| |
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|||||||| || ||||| ||||||||||| ||||||||||| ||||| ||||| || || ||||||||||| | || ||||||||||| ||||| | |
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| T |
6700236 |
caatccattaatagcttcaccagcaaccttagaaagccaagaaggccaaccagctgcaacctgttcaccatgaacattattaggtggattactcaacctc |
6700137 |
T |
|
| Q |
442 |
ggattagccttcaaagat |
459 |
Q |
| |
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||||| |||||| ||||| |
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| T |
6700136 |
ggattcgccttcgaagat |
6700119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 431
Target Start/End: Original strand, 47180792 - 47180847
Alignment:
| Q |
376 |
agccaagatggccacccagcagccacttgttcaccatgtatatggttaggtggatt |
431 |
Q |
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|||||||||||||| |||||||| || ||||||||| ||| ||| ||||||||||| |
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| T |
47180792 |
agccaagatggccatccagcagcaacctgttcaccacgtaaatgcttaggtggatt |
47180847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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