View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_high_7 (Length: 438)
Name: NF19453_high_7
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 4 - 423
Target Start/End: Complemental strand, 4536612 - 4536193
Alignment:
| Q |
4 |
tattgttttaatttagtgctgaacttgaatttcttagataataaggtattcaaattccaattttgtaggtggaaaaaacgtagtcgaaagggaagatacc |
103 |
Q |
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| T |
4536612 |
tattgttttaatttagtgctgaacttgaatttcttagataataaggtattcaaattccaattttgtaggtggaaaaaacgtagtcgaaagggaagatacc |
4536513 |
T |
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| Q |
104 |
actaaaggcgtttgtcaaacagattatctaacggagtttatttattggcaaagtcggagagggtctaataattttcctgcaaacaaatgggtctaaatat |
203 |
Q |
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| T |
4536512 |
actaaaggcgtttgtcaaacagattatctaacggagtttatttataggcaaagtcggagagggtctaataatttctctgcaaacaaatgggtctaaatat |
4536413 |
T |
|
| Q |
204 |
gaatccaagttttagctacaaaacttgtaccacaaacaaaatcgaacaactcgcattttgactctttctacttctgagcaaatttatcgaagtcaaaatt |
303 |
Q |
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| T |
4536412 |
gaatccaagttttagctacaaaacttgtaccacaaacaaaatcggacaactcgcattttgactctttctacttctgagcaaatttatcaaagtcaaaatt |
4536313 |
T |
|
| Q |
304 |
tggtcgtccaatcatcttgattgcgtggctacgtcaaatgtatgattttcttattgcgagaattgaaatctcaccgatttttcattgttatttatttatt |
403 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4536312 |
tggtcgtccaatcatcttgattgcgtcgctacgtcaaatgtatgattttcttattgcgagaattgaaatctcaccgatttttcattgttatttatttatt |
4536213 |
T |
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| Q |
404 |
tattaaaggtgtgtcattat |
423 |
Q |
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| T |
4536212 |
tattaaaggtgtgtcattat |
4536193 |
T |
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