View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19453_low_1 (Length: 794)

Name: NF19453_low_1
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19453_low_1
NF19453_low_1
[»] chr7 (21 HSPs)
chr7 (377-786)||(11738145-11738557)
chr7 (355-661)||(11744779-11745087)
chr7 (72-357)||(11738553-11738841)
chr7 (1-58)||(11738911-11738968)
chr7 (688-777)||(15680836-15680925)
chr7 (690-777)||(20549820-20549907)
chr7 (688-777)||(32287406-32287495)
chr7 (688-782)||(33994239-33994333)
chr7 (688-777)||(21880179-21880268)
chr7 (715-784)||(5409767-5409836)
chr7 (708-777)||(26033393-26033462)
chr7 (698-777)||(598245-598324)
chr7 (239-278)||(11654071-11654110)
chr7 (686-777)||(22484050-22484141)
chr7 (715-777)||(2334314-2334376)
chr7 (688-734)||(5835274-5835320)
chr7 (239-277)||(17611655-17611693)
chr7 (242-275)||(3266808-3266841)
chr7 (708-765)||(6028683-6028740)
chr7 (688-757)||(8234173-8234242)
chr7 (708-777)||(24339700-24339769)
[»] chr8 (22 HSPs)
chr8 (688-782)||(40332218-40332312)
chr8 (688-777)||(3025578-3025667)
chr8 (239-278)||(21238047-21238086)
chr8 (688-782)||(18407746-18407840)
chr8 (688-768)||(4298841-4298918)
chr8 (688-777)||(14134726-14134815)
chr8 (693-777)||(926731-926815)
chr8 (688-736)||(4786322-4786370)
chr8 (696-772)||(5813627-5813703)
chr8 (239-278)||(470937-470976)
chr8 (242-277)||(2024886-2024921)
chr8 (242-277)||(4757580-4757615)
chr8 (242-277)||(10148368-10148403)
chr8 (239-278)||(40618863-40618902)
chr8 (698-772)||(126295-126369)
chr8 (709-783)||(29510230-29510304)
chr8 (239-277)||(34102528-34102566)
chr8 (691-777)||(36450697-36450783)
chr8 (708-777)||(21465470-21465539)
chr8 (715-772)||(22197679-22197736)
chr8 (708-777)||(22652034-22652103)
chr8 (691-772)||(31109466-31109547)
[»] chr1 (25 HSPs)
chr1 (691-777)||(37598861-37598947)
chr1 (688-777)||(1815284-1815373)
chr1 (688-777)||(18337356-18337445)
chr1 (688-777)||(22515830-22515919)
chr1 (688-772)||(5898214-5898298)
chr1 (689-777)||(46348326-46348414)
chr1 (688-783)||(51410052-51410147)
chr1 (688-757)||(7353455-7353525)
chr1 (688-766)||(40181898-40181976)
chr1 (691-777)||(42359392-42359478)
chr1 (688-777)||(1486647-1486741)
chr1 (688-765)||(38078616-38078693)
chr1 (688-769)||(40258884-40258965)
chr1 (738-781)||(21038163-21038206)
chr1 (242-277)||(42491301-42491336)
chr1 (239-278)||(47133163-47133202)
chr1 (239-277)||(26535598-26535636)
chr1 (239-277)||(27456751-27456789)
chr1 (688-758)||(28674827-28674897)
chr1 (688-722)||(30749867-30749901)
chr1 (688-722)||(30771318-30771352)
chr1 (708-782)||(40917807-40917881)
chr1 (708-777)||(6427522-6427591)
chr1 (708-777)||(31694642-31694711)
chr1 (689-722)||(52903277-52903310)
[»] chr3 (25 HSPs)
chr3 (688-777)||(55401102-55401191)
chr3 (688-782)||(40993273-40993367)
chr3 (688-777)||(18426976-18427065)
chr3 (688-765)||(10954979-10955056)
chr3 (688-777)||(35222965-35223054)
chr3 (688-777)||(20503492-20503581)
chr3 (688-769)||(28918028-28918111)
chr3 (695-777)||(13845468-13845550)
chr3 (708-782)||(41961577-41961651)
chr3 (688-777)||(8842356-8842445)
chr3 (688-772)||(3631711-3631795)
chr3 (707-771)||(4987229-4987293)
chr3 (242-277)||(105710-105745)
chr3 (239-278)||(14859752-14859791)
chr3 (689-767)||(7171529-7171607)
chr3 (688-722)||(7928477-7928511)
chr3 (239-277)||(23799740-23799778)
chr3 (688-757)||(34307738-34307812)
chr3 (247-277)||(40883542-40883572)
chr3 (239-277)||(46304313-46304351)
chr3 (239-277)||(48401524-48401562)
chr3 (239-277)||(50981125-50981163)
chr3 (239-277)||(51084259-51084297)
chr3 (689-722)||(8383285-8383318)
chr3 (691-772)||(25093532-25093613)
[»] scaffold0053 (1 HSPs)
scaffold0053 (696-777)||(8833-8914)
[»] chr6 (20 HSPs)
chr6 (688-777)||(17841532-17841621)
chr6 (688-782)||(28715322-28715416)
chr6 (688-777)||(28152125-28152214)
chr6 (688-777)||(34595161-34595250)
chr6 (708-782)||(10339052-10339126)
chr6 (687-757)||(29020938-29021008)
chr6 (708-783)||(8365445-8365520)
chr6 (688-782)||(4877970-4878063)
chr6 (688-778)||(32978841-32978931)
chr6 (688-777)||(7378006-7378095)
chr6 (239-278)||(31297078-31297117)
chr6 (239-278)||(31851673-31851712)
chr6 (688-722)||(7265591-7265625)
chr6 (248-278)||(29744494-29744524)
chr6 (239-277)||(33052960-33052998)
chr6 (688-777)||(6898224-6898313)
chr6 (726-783)||(8776905-8776962)
chr6 (710-771)||(17435259-17435320)
chr6 (688-757)||(19040379-19040448)
chr6 (689-722)||(21924933-21924966)
[»] chr5 (17 HSPs)
chr5 (688-777)||(21576688-21576777)
chr5 (688-777)||(21190999-21191088)
chr5 (688-782)||(43564908-43565002)
chr5 (690-757)||(30502351-30502418)
chr5 (690-757)||(30542694-30542761)
chr5 (687-772)||(30098986-30099071)
chr5 (709-778)||(39268540-39268609)
chr5 (708-777)||(39698599-39698668)
chr5 (242-277)||(586172-586207)
chr5 (239-278)||(8984781-8984820)
chr5 (239-278)||(10332340-10332379)
chr5 (239-277)||(13007487-13007525)
chr5 (239-277)||(27576160-27576198)
chr5 (688-722)||(28588672-28588706)
chr5 (715-777)||(31084382-31084444)
chr5 (708-777)||(32766875-32766944)
chr5 (688-769)||(42893387-42893468)
[»] chr4 (24 HSPs)
chr4 (688-777)||(23292929-23293018)
chr4 (687-782)||(16073420-16073515)
chr4 (696-777)||(34306747-34306828)
chr4 (688-769)||(49431053-49431134)
chr4 (688-768)||(21945530-21945610)
chr4 (688-777)||(2361918-2362007)
chr4 (708-777)||(19312393-19312462)
chr4 (688-769)||(28964199-28964280)
chr4 (688-772)||(8423666-8423750)
chr4 (726-777)||(14465008-14465059)
chr4 (688-734)||(54580009-54580055)
chr4 (725-778)||(28084588-28084641)
chr4 (688-757)||(40179599-40179668)
chr4 (239-278)||(9048952-9048991)
chr4 (745-784)||(18513171-18513210)
chr4 (242-277)||(36700502-36700537)
chr4 (741-783)||(3064865-3064907)
chr4 (239-277)||(32766793-32766831)
chr4 (239-277)||(40065986-40066024)
chr4 (239-277)||(44596938-44596976)
chr4 (239-277)||(56156440-56156478)
chr4 (745-782)||(11596295-11596332)
chr4 (688-777)||(12895217-12895306)
chr4 (688-777)||(35157928-35158017)
[»] chr2 (27 HSPs)
chr2 (688-777)||(2438662-2438751)
chr2 (688-777)||(28596496-28596585)
chr2 (708-777)||(35056926-35056995)
chr2 (688-777)||(37559004-37559093)
chr2 (710-777)||(26769571-26769638)
chr2 (710-768)||(27084318-27084376)
chr2 (688-777)||(18840956-18841045)
chr2 (708-777)||(30717462-30717531)
chr2 (239-275)||(29279358-29279394)
chr2 (688-767)||(12224250-12224329)
chr2 (242-277)||(28261559-28261594)
chr2 (708-783)||(37419801-37419876)
chr2 (239-278)||(37994551-37994590)
chr2 (738-777)||(44635570-44635609)
chr2 (688-722)||(5367219-5367253)
chr2 (691-777)||(15972903-15972989)
chr2 (688-722)||(20242725-20242759)
chr2 (688-766)||(37411198-37411276)
chr2 (239-277)||(37876399-37876437)
chr2 (239-277)||(41328008-41328046)
chr2 (688-773)||(5040761-5040846)
chr2 (688-757)||(29176456-29176525)
chr2 (689-722)||(34691803-34691836)
chr2 (689-722)||(34714215-34714248)
chr2 (688-777)||(34993925-34994014)
chr2 (688-777)||(38117102-38117191)
chr2 (687-720)||(44860346-44860379)
[»] scaffold0652 (1 HSPs)
scaffold0652 (691-777)||(405-491)
[»] scaffold0475 (1 HSPs)
scaffold0475 (691-777)||(3338-3424)
[»] scaffold0050 (1 HSPs)
scaffold0050 (688-777)||(70305-70394)
[»] scaffold0512 (1 HSPs)
scaffold0512 (698-777)||(4979-5058)
[»] scaffold0008 (1 HSPs)
scaffold0008 (708-777)||(263304-263373)
[»] scaffold0361 (1 HSPs)
scaffold0361 (688-777)||(14557-14643)
[»] scaffold0083 (1 HSPs)
scaffold0083 (688-734)||(45516-45562)
[»] scaffold0003 (1 HSPs)
scaffold0003 (708-777)||(241652-241721)


Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-172; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 377 - 786
Target Start/End: Complemental strand, 11738557 - 11738145
Alignment:
Q  377 taaatgctaatgagtaatttgacatgattgtgcaataggaagtggtggatcagaaaaggaaccatcaagtattctatttgcaatccattgatttgctgct 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11738557 taaatgctaatgagtaatttgacatgattgtgcaataggaagtggtggatctgaaaaagaaccatcaagtattctatttgcaatccattgatttgctgct 11738458  T
Q  477 tcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaactagcaactatttctttaccattaatcgttgctttatttccacaat 576  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||    
T  11738457 tcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaacttgtaacaatttctttaccattaatcgttgctttattcccacaat 11738358  T
Q  577 aaacatggtatccatcttcatgatacccacaacatattccagatgggtccacaaatcctacaattcaattcaacaattcataattaaggggttaataa-- 674  Q
    ||||||||||||||| ||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||| |||||||||||||||      
T  11738357 aaacatggtatccattttcatgatacccacaacatattccagaaggatcaacaaatcctacaattcaattcaacaattcatagttaaggggttaataata 11738258  T
Q  675 -nnnnnnnngtgtgcataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgt 773  Q
              | ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  11738257 tatttttttttttgcataattcagtgtaattatacgtgtcgctgtcggaaatgagacgtgttccacactgagacacgcctaatcagaggagtgtccgtgt 11738158  T
Q  774 ttcacaggttctg 786  Q
    |||| ||||||||    
T  11738157 ttcataggttctg 11738145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 355 - 661
Target Start/End: Complemental strand, 11745087 - 11744779
Alignment:
Q  355 aatagaattagaataggtag--tgtaaatgctaatgagtaatttgacatgattgtgcaataggaagtggtggatcagaaaaggaaccatcaagtattcta 452  Q
    |||||||||| |||||| ||  ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  11745087 aatagaattaaaataggcaggatgtaaatgctaatgagtaatttgacatgagtgtgcaataggaagtgatggatctgaaaaggaaccattaagtattcta 11744988  T
Q  453 tttgcaatccattgatttgctgcttcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaactagcaactatttctttaccat 552  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11744987 tttgcaatccattgatttgctgcttcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaactagcaactatttctttaccat 11744888  T
Q  553 taatcgttgctttatttccacaataaacatggtatccatcttcatgatacccacaacatattccagatgggtccacaaatcctacaattcaattcaacaa 652  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||    
T  11744887 taatcattgctttatttccacaataaacatggtatccatcttcatgatacccacaacatattccagaagggttaacaaatcctacaattcaattcaacaa 11744788  T
Q  653 ttcataatt 661  Q
    |||||||||    
T  11744787 ttcataatt 11744779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 72 - 357
Target Start/End: Complemental strand, 11738841 - 11738553
Alignment:
Q  72 gttaagatcaatgaaaattttgcaagtgctaattcaagtgcgacaaacatcaattctt-gattccataaaattaaactatggttcatacggttacaaatg 170  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||  || |||||||||||||| ||||||||||||||||||||||||||    
T  11738841 gttaagatcaatgaaagttttgcaagtgctaattcaagtgcaacaaacatcaatgatttgattccataaaattcaactatggttcatacggttacaaatg 11738742  T
Q  171 taattatagtagcggttacataaagtaaaacgatgtctttatcaaaagctattcatgannnnnnnnnnacaaaaactaaacaat----attcattcattc 266  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||          ||||||||||||||||    ||||||||||||    
T  11738741 taattatagtagcggttacataaagtcaaacgatgtctttatcgaaagctattcatga-ttttttttgacaaaaactaaacaatattcattcattcattc 11738643  T
Q  267 aaattgatagaaaacaaagcgaaagaagaaagaaactgtaatctataatgaataaatagaggtaagattaaaccactcttgcattgtaaat 357  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  11738642 aaattgatagaaaacaaagcg-aagaagaaagaaactgtaatctagaatgaataaatagaggtaagattaaaccactcttgcattataaat 11738553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 11738968 - 11738911
Alignment:
Q  1 ctttgcaaacgttgaagttcaagtttattgtagtcatgaataaatattttacatcaat 58  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11738968 cttttcaaacgttgaagttcaagtttattgtagtcatgaataaatattttacatcaat 11738911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 15680836 - 15680925
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||| |||||||||||| |||||||||||||| | ||||||||| | |||| |||||||| |||||  |||||||||||||| ||||    
T  15680836 cataatttagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttca 15680925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 690 - 777
Target Start/End: Original strand, 20549820 - 20549907
Alignment:
Q  690 taattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||||||||||| |||||||||||||| |  |||| ||| | ||| |||||||||||||||| |||||||| ||||| ||||    
T  20549820 taattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacaatgagacacgcctaatccgaggagtgcccgtgcttca 20549907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 777
Target Start/End: Complemental strand, 32287495 - 32287406
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||||| || |||| |||||||||||||| |||||| |||| | |||| | ||||| ||||||| |||||||||||||| ||||    
T  32287495 cataattcagtgcaagtatatgtgtcggtgtcggacatgacaagtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttca 32287406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 688 - 782
Target Start/End: Original strand, 33994239 - 33994333
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 782  Q
    |||||||||||| ||||| | ||||||||||| || | ||||| ||| | |||| |||||||||||||||  |||||||| ||||||||| ||||    
T  33994239 cataattcagtgcaattacaagtgtcggtgtcagacacgacacatgtccaacaccgagacacgcctaatccaaggagtgttcgtgtttcataggt 33994333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 21880179 - 21880268
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||||||||||| | |||||||||||||| | ||||| ||| | ||||   ||||||||||||| ||| |||||||||| ||||    
T  21880179 cataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttca 21880268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 715 - 784
Target Start/End: Complemental strand, 5409836 - 5409767
Alignment:
Q  715 gtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggttc 784  Q
    |||||||| | ||||||||| | |||| | ||||||||||||| |||||||||||||| |||| ||||||    
T  5409836 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcataggttc 5409767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 708 - 777
Target Start/End: Complemental strand, 26033462 - 26033393
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||||| || ||||||||||| | | || | ||||| ||||||| |||||||||||||||||||    
T  26033462 cgtgtcggtgtcagacatgacacgtgtccgataccgcgacacacctaatccgaggagtgtccgtgtttca 26033393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 777
Target Start/End: Original strand, 598245 - 598324
Alignment:
Q  698 tgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||| || ||||||||||| || | ||||||||| | |||| | ||||||||||||| ||| |||||||||| ||||    
T  598245 tgtaattgtaagtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 598324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 11654110 - 11654071
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgatagaa 278  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  11654110 acaaaagcaaaacaatattcattcattcaaattgatagaa 11654071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 686 - 777
Target Start/End: Original strand, 22484050 - 22484141
Alignment:
Q  686 tgcataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||||||| |||||||| ||||||||||| || ||||||| ||| | |||  |||||| | || ||| ||| |||||||||| ||||    
T  22484050 tgcataattcagtataattatatgtgtcggtgtcagacatgacacatgtccgacatcgagacatgtctgatccgagaagtgtccgtgcttca 22484141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 715 - 777
Target Start/End: Original strand, 2334314 - 2334376
Alignment:
Q  715 gtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||| | ||||| ||| | ||||||| ||||| |||||| |||||||||||||||||||    
T  2334314 gtgtcggacacgacacatgtccgacactgaaacacgtctaatccgaggagtgtccgtgtttca 2334376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 734
Target Start/End: Original strand, 5835274 - 5835320
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgt 734  Q
    |||||||||||||||||||| ||||||||||| || |||||| ||||    
T  5835274 cataattcagtgtaattatatgtgtcggtgtcagacatgacatgtgt 5835320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 17611693 - 17611655
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  17611693 acaaaaacaaaacgatattcattcattcaaattgataga 17611655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 242 - 275
Target Start/End: Complemental strand, 3266841 - 3266808
Alignment:
Q  242 aaaactaaacaatattcattcattcaaattgata 275  Q
    |||| |||||||||||||||||||||||||||||    
T  3266841 aaaaataaacaatattcattcattcaaattgata 3266808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 765
Target Start/End: Original strand, 6028683 - 6028740
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagt 765  Q
    |||||| |||||| | | |||||| |||| ||||||||||||||||||||||| ||||    
T  6028683 cgtgtcagtgtcgaacacgacacgagttcgacactgagacacgcctaatctgaagagt 6028740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 757
Target Start/End: Original strand, 8234173 - 8234242
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 757  Q
    |||||||||||||| ||| | ||| |||||||||| | ||||| ||| | |||| |||||||||||||||    
T  8234173 cataattcagtgtagttacaagtgccggtgtcggacacgacacatgtccgacaccgagacacgcctaatc 8234242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 777
Target Start/End: Original strand, 24339700 - 24339769
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||||||||| | ||||||| | | |||| | ||||||||||||| |||||||| ||||| ||||    
T  24339700 cgtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagtgcccgtgcttca 24339769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 688 - 782
Target Start/End: Original strand, 40332218 - 40332312
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 782  Q
    |||||||||||||||||| | |||||||||| ||| | ||||||||| |||||| | ||| ||||||||| ||||||||||||||||||||||||    
T  40332218 cataattcagtgtaattacaagtgtcggtgtgggacacgacacgtgtcccacaccgggacgcgcctaatccgaggagtgtccgtgtttcacaggt 40332312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 3025578 - 3025667
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||||||||||||| ||||| |||||||| | |||||||||   |||||| |||||| |||||| |||||||||||||| ||||    
T  3025578 cataattcagtgtaattataggtgtcagtgtcggacacgacacgtgtctgacactgtgacacggctaatccgaggagtgtccgtgcttca 3025667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 21238086 - 21238047
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgatagaa 278  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  21238086 acaaaaacaaaacaatattcattcattcaaattgatagaa 21238047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 688 - 782
Target Start/End: Original strand, 18407746 - 18407840
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 782  Q
    |||||||||||||||||| | |||||| || |||| | ||||| ||| | |||||  ||||||||||||  |||||||||||||| |||| ||||    
T  18407746 cataattcagtgtaattacaagtgtcgctgccggacacgacacatgtccgacactaggacacgcctaattggaggagtgtccgtgcttcataggt 18407840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 768
Target Start/End: Complemental strand, 4298918 - 4298841
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtc 768  Q
    ||||||| | |||||||| | ||||||||||| ||  |||||||||||| |||| | ||||||||||||||||||||||||    
T  4298918 cataatttaatgtaattacaagtgtcggtgtcaga--tgacacgtgttcgacacgg-gacacgcctaatctgaggagtgtc 4298841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 14134726 - 14134815
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||||||||||||||  ||||||||||  | | ||||||||| |  |||   ||||||||||||  |||||||||||||||||||    
T  14134726 cataattcagtgtaattatatatgtcggtgtcaaacacgacacgtgtccgtcaccaggacacgcctaattcgaggagtgtccgtgtttca 14134815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 693 - 777
Target Start/End: Complemental strand, 926815 - 926731
Alignment:
Q  693 ttcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||||||||| ||||||||||||||   ||||||||| | |||| | |||| || | ||| |||||||||||||| ||||    
T  926815 ttcagtgtaattataagtgtcggtgtcggacgcgacacgtgtccgacaccgggacatgctttatccgaggagtgtccgtgcttca 926731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 736
Target Start/End: Complemental strand, 4786370 - 4786322
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttc 736  Q
    |||||||||||||||||||| |||||||||||||| | |||| ||||||    
T  4786370 cataattcagtgtaattatatgtgtcggtgtcggatacgacatgtgttc 4786322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 696 - 772
Target Start/End: Original strand, 5813627 - 5813703
Alignment:
Q  696 agtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 772  Q
    ||||||| || | |||||||||||||| | ||||||||| | |||| | ||||||||||||  ||||||||||||||    
T  5813627 agtgtaaatacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaattggaggagtgtccgtg 5813703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 470937 - 470976
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgatagaa 278  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  470937 acaaaaacaaaacaatattcattcatttaaattgatagaa 470976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 2024886 - 2024921
Alignment:
Q  242 aaaactaaacaatattcattcattcaaattgataga 277  Q
    |||| |||||||||||||||||||||||||||||||    
T  2024886 aaaagtaaacaatattcattcattcaaattgataga 2024921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 4757615 - 4757580
Alignment:
Q  242 aaaactaaacaatattcattcattcaaattgataga 277  Q
    |||||||||| |||||||||||||||||||||||||    
T  4757615 aaaactaaacgatattcattcattcaaattgataga 4757580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 10148403 - 10148368
Alignment:
Q  242 aaaactaaacaatattcattcattcaaattgataga 277  Q
    |||| |||||||||||||||||||||||||||||||    
T  10148403 aaaaataaacaatattcattcattcaaattgataga 10148368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 40618863 - 40618902
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgatagaa 278  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  40618863 acaaaaacaaaacgatattcattcattcaaattgatagaa 40618902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 698 - 772
Target Start/End: Complemental strand, 126369 - 126295
Alignment:
Q  698 tgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 772  Q
    |||||||||| ||||| |||||||| | ||||||||| | | || | |||||| |||||| ||||||||||||||    
T  126369 tgtaattatatgtgtcagtgtcggacacgacacgtgtccaataccgggacacggctaatccgaggagtgtccgtg 126295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 783
Target Start/End: Complemental strand, 29510304 - 29510230
Alignment:
Q  709 gtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 783  Q
    |||||||||||||| | ||| ||||| | |||| | ||||| ||||||| |||||||||||||| |||| |||||    
T  29510304 gtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcataggtt 29510230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 34102566 - 34102528
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  34102566 acaaaaacaaaacaatattcattcattcaagttgataga 34102528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 691 - 777
Target Start/End: Complemental strand, 36450783 - 36450697
Alignment:
Q  691 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||||||||| | |||| ||||||||| | ||| ||||| | ||||   ||||||||||||| |||||||||| ||| ||||    
T  36450783 aattcagtgtaattacaagtgtaggtgtcggacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttca 36450697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 777
Target Start/End: Original strand, 21465470 - 21465539
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||| |||||||| | ||||||||| | |||| | || ||||||||| ||||||||||||||| ||||    
T  21465470 cgtgtcagtgtcggacacgacacgtgtccaacacagggatacgcctaatttgaggagtgtccgtgcttca 21465539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 715 - 772
Target Start/End: Complemental strand, 22197736 - 22197679
Alignment:
Q  715 gtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 772  Q
    |||||||| ||||||||||| | |||| |   ||||||||||||||||||||||||||    
T  22197736 gtgtcggacatgacacgtgtccgacaccggatcacgcctaatctgaggagtgtccgtg 22197679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 777
Target Start/End: Original strand, 22652034 - 22652103
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||||||||| | |||| |||| | |||| | |||||| |||||| |||||||||||||| ||||    
T  22652034 cgtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttca 22652103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 772
Target Start/End: Complemental strand, 31109547 - 31109466
Alignment:
Q  691 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 772  Q
    |||||||| ||| |||| ||||| |||||||| |||   |||||   |||||| ||||||||||||| ||||||||||||||    
T  31109547 aattcagtctaactatatgtgtcagtgtcggacatgtgtcgtgtatgacactgggacacgcctaatccgaggagtgtccgtg 31109466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 691 - 777
Target Start/End: Original strand, 37598861 - 37598947
Alignment:
Q  691 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||||||||||| |||||||||||||| | ||||||||| | ||| || ||||||||||||| |||||||||||||| ||||    
T  37598861 aattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttca 37598947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 1815284 - 1815373
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||||||||||| | ||||||||||| || | ||||| ||| | |||| | |||||||||||||||||||||| ||||| ||||    
T  1815284 cataattcagtgtaattacaagtgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatctgaggagtgaccgtgattca 1815373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 18337356 - 18337445
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||||||||||| | |||||||||||||| |  |||||||| | |||||| |||| |||| ||| |||||||||||||| ||||    
T  18337356 cataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttca 18337445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 777
Target Start/End: Complemental strand, 22515919 - 22515830
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||| |||||||||| | |||||||||||||| | ||||| | | | |||| ||||||||||||||| |||||||||||||| ||||    
T  22515919 cataatttagtgtaattacaagtgtcggtgtcggacacgacacatatccgacaccgagacacgcctaatccgaggagtgtccgtgcttca 22515830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 688 - 772
Target Start/End: Complemental strand, 5898298 - 5898214
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 772  Q
    |||||||||||||||||||| | ||||||||| || | ||||||||| | |||| | |||||| |||||| ||||||||||||||    
T  5898298 cataattcagtgtaattatatgcgtcggtgtcagacacgacacgtgtccaacaccgggacacgtctaatccgaggagtgtccgtg 5898214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 689 - 777
Target Start/End: Complemental strand, 46348414 - 46348326
Alignment:
Q  689 ataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||| |||||||||| | |||||||||||||| | ||||||||| | |||| ||||||||||| ||| |||| ||||||||| ||||    
T  46348414 ataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctgatccgaggtgtgtccgtgcttca 46348326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 688 - 783
Target Start/End: Original strand, 51410052 - 51410147
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 783  Q
    |||||||||||||||||| | |||||||||||||| | ||||||| | | |||| |||||||||||||||  |||||| | |||| |||| |||||    
T  51410052 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtatccgacaccgagacacgcctaatccaaggagtattcgtgcttcataggtt 51410147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 688 - 757
Target Start/End: Complemental strand, 7353525 - 7353455
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttcc-acactgagacacgcctaatc 757  Q
    ||||||| ||||||||||||  ||||||||||| | ||||||||| |||| ||||||||||||||||||||    
T  7353525 cataatttagtgtaattatatatgtcggtgtcgaacatgacacgttttccgacactgagacacgcctaatc 7353455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 688 - 766
Target Start/End: Original strand, 40181898 - 40181976
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtg 766  Q
    |||||||||||||||||||| || ||||||||||| |  |||||||| | |||| | ||||||||||||| ||||||||    
T  40181898 cataattcagtgtaattatatgtatcggtgtcggacacaacacgtgtcctacaccgggacacgcctaatccgaggagtg 40181976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 691 - 777
Target Start/End: Complemental strand, 42359478 - 42359392
Alignment:
Q  691 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||||||||| | |||||||||||||| | |||  |||| | |||| | ||||||||||||| |||||||||||||| ||||    
T  42359478 aattcagtgtaattacaagtgtcggtgtcggacaagacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttca 42359392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 688 - 777
Target Start/End: Complemental strand, 1486741 - 1486647
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcg-----gaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||||||||||||| ||||||||||||     || | ||||||||| | |||| | ||||||||||||| |||||||||| ||| ||||    
T  1486741 cataattcagtgtaattataagtgtcggtgtcgtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttca 1486647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 765
Target Start/End: Complemental strand, 38078693 - 38078616
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagt 765  Q
    ||||||||| |||||||| | |||||||||||||| | ||||| ||||| ||||   ||||||||||||| |||||||    
T  38078693 cataattcaatgtaattacaagtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgaggagt 38078616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 769
Target Start/End: Complemental strand, 40258965 - 40258884
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 769  Q
    |||||||||||||||||| | ||||||||||| || | ||||| ||| | ||||   ||||||||||||| |||||||||||    
T  40258965 cataattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtcc 40258884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 738 - 781
Target Start/End: Original strand, 21038163 - 21038206
Alignment:
Q  738 acactgagacacgcctaatctgaggagtgtccgtgtttcacagg 781  Q
    ||||||||||||||||||||||| ||||||| ||| ||||||||    
T  21038163 acactgagacacgcctaatctgatgagtgtctgtgcttcacagg 21038206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 42491336 - 42491301
Alignment:
Q  242 aaaactaaacaatattcattcattcaaattgataga 277  Q
    |||| |||||||||||||||||||||||||||||||    
T  42491336 aaaaataaacaatattcattcattcaaattgataga 42491301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 47133202 - 47133163
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgatagaa 278  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  47133202 acaaaaacaaaacgatattcattcattcaaattgatagaa 47133163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 26535636 - 26535598
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  26535636 acaaaaacaaaacgatattcattcattcaaattgataga 26535598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 27456789 - 27456751
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  27456789 acaaaaacaaaacgatattcattcattcaaattgataga 27456751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 758
Target Start/End: Original strand, 28674827 - 28674897
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatct 758  Q
    ||||||||||| ||||||||  ||| |||||| || | ||||| ||| | |||||||||||||||||||||    
T  28674827 cataattcagtataattatatatgttggtgtcagacacgacacttgtccaacactgagacacgcctaatct 28674897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 722
Target Start/End: Original strand, 30749867 - 30749901
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcgga 722  Q
    |||||||||||||||||||| ||||||||||||||    
T  30749867 cataattcagtgtaattatatgtgtcggtgtcgga 30749901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 722
Target Start/End: Original strand, 30771318 - 30771352
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcgga 722  Q
    |||||||||||||||||||| ||||||||||||||    
T  30771318 cataattcagtgtaattatatgtgtcggtgtcgga 30771352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 708 - 782
Target Start/End: Original strand, 40917807 - 40917881
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 782  Q
    ||||||||||| ||| | ||||||||| | |||| | ||||||||||||| ||||| |||||||| |||| ||||    
T  40917807 cgtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcataggt 40917881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 777
Target Start/End: Original strand, 6427522 - 6427591
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||| || |||||| | ||||||||| | |||| | |||||||||||||||| ||||||||||| ||||    
T  6427522 cgtgtaggcgtcggacacgacacgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttca 6427591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 777
Target Start/End: Complemental strand, 31694711 - 31694642
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||||||||| |  |||| | ||| |||| |  ||||||||||||||||||||||||||| ||||    
T  31694711 cgtgtcggtgtcggacacaacacatattcgacaccggaacacgcctaatctgaggagtgtccgtgcttca 31694642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 722
Target Start/End: Original strand, 52903277 - 52903310
Alignment:
Q  689 ataattcagtgtaattatacgtgtcggtgtcgga 722  Q
    ||||||||||||||||||| ||||||||||||||    
T  52903277 ataattcagtgtaattatatgtgtcggtgtcgga 52903310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 55401102 - 55401191
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||| |||||||||| | |||||||||||||| | ||||||||| | |||| ||||||||||||||| |||||||||||||| ||||    
T  55401102 cataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttca 55401191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 688 - 782
Target Start/End: Complemental strand, 40993367 - 40993273
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 782  Q
    |||||||||||||||||||| |||||||||||||| | ||||| ||| | |||| | ||||||||||||| ||||||||||| || |||| ||||    
T  40993367 cataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcataggt 40993273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 18426976 - 18427065
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||| |||||||||||  ||||||||||||| | ||||||||| |  ||| | ||||| |||||||||||||||||||||||||||    
T  18426976 cataattcggtgtaattatatatgtcggtgtcggatacgacacgtgtccggcaccgggacacacctaatctgaggagtgtccgtgtttca 18427065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 765
Target Start/End: Original strand, 10954979 - 10955056
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagt 765  Q
    |||||||||||||||| | | |||||||||||||| | ||||||||| | |||||| ||||||||||||| |||||||    
T  10954979 cataattcagtgtaatcacaagtgtcggtgtcggacacgacacgtgtccgacactgggacacgcctaatccgaggagt 10955056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 35222965 - 35223054
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||   |||| | ||||||| | ||| |||||||||||||| ||||    
T  35222965 cataattcaatgtaattatatgtgtcggtgtcggacatgacacgtgtctgacacggggacacgctttatccgaggagtgtccgtgcttca 35223054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 20503492 - 20503581
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||||||||||| | |||||||||| ||| | ||||| |||   |||| | ||||||||||||| |||||||||||||| ||||    
T  20503492 cataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttca 20503581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 688 - 769
Target Start/End: Original strand, 28918028 - 28918111
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtc--ggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 769  Q
    |||||||||||||||||| | |||||||||||  ||| | ||||||||| | |||||| |||||||||||||  ||||||||||    
T  28918028 cataattcagtgtaattacaagtgtcggtgtcgtggacacgacacgtgtccgacactgggacacgcctaatccaaggagtgtcc 28918111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 695 - 777
Target Start/End: Complemental strand, 13845550 - 13845468
Alignment:
Q  695 cagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||||||| |||||||||||||| | || ||||||   |||| ||||||||||| |||  ||||||||||||| ||||    
T  13845550 cagtgtaattatatgtgtcggtgtcggacacgagacgtgtctgacacggagacacgccttatccaaggagtgtccgtgcttca 13845468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 708 - 782
Target Start/End: Complemental strand, 41961651 - 41961577
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 782  Q
    ||||||||| ||||| | ||||||||| | |||||| ||||||||||||| ||| |||||||||| |||| ||||    
T  41961651 cgtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcataggt 41961577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 8842356 - 8842445
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||  |||||||||||  |||||||||| || | ||||| ||||  | | |||||||||||||||| |||||||||||||| ||||    
T  8842356 cataatttggtgtaattatatatgtcggtgtcagacacgacacatgttagatattgagacacgcctaatccgaggagtgtccgtgcttca 8842445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 772
Target Start/End: Original strand, 3631711 - 3631795
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 772  Q
    |||||||||||||||||||| ||| | |||||||| | ||||| ||| | ||||   |||||||||| || ||||||||||||||    
T  3631711 cataattcagtgtaattatatgtgccagtgtcggacacgacacatgtccgacaccaggacacgcctagtccgaggagtgtccgtg 3631795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 707 - 771
Target Start/End: Complemental strand, 4987293 - 4987229
Alignment:
Q  707 acgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgt 771  Q
    |||||||||||| ||| | ||||||||| | |||| | ||||||||||||| |||||||||||||    
T  4987293 acgtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgt 4987229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 105710 - 105745
Alignment:
Q  242 aaaactaaacaatattcattcattcaaattgataga 277  Q
    |||| |||||||||||||||||||||||||||||||    
T  105710 aaaaataaacaatattcattcattcaaattgataga 105745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 14859791 - 14859752
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgatagaa 278  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  14859791 acaaaaacagaacaatattcattcattcaaattgatagaa 14859752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 689 - 767
Target Start/End: Original strand, 7171529 - 7171607
Alignment:
Q  689 ataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgt 767  Q
    ||||||| ||||||||| | |||| ||||||||| | ||||||||| | |||| | |||||||||||||  ||||||||    
T  7171529 ataattcggtgtaattacaagtgttggtgtcggacacgacacgtgtccgacaccgcgacacgcctaatccaaggagtgt 7171607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 722
Target Start/End: Original strand, 7928477 - 7928511
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcgga 722  Q
    |||||||||||||||||||| ||||||||||||||    
T  7928477 cataattcagtgtaattatatgtgtcggtgtcgga 7928511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 23799740 - 23799778
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  23799740 acaaaaacaaaacgatattcattcattcaaattgataga 23799778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 757
Target Start/End: Complemental strand, 34307812 - 34307738
Alignment:
Q  688 cataattcagtgtaattata-----cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 757  Q
    |||| |||||||||||||||     ||||||||||||||| | ||||||| ||| | ||||||||||||||||||    
T  34307812 catatttcagtgtaattataagtgtcgtgtcggtgtcggacacgacacgtcttcgatactgagacacgcctaatc 34307738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 247 - 277
Target Start/End: Original strand, 40883542 - 40883572
Alignment:
Q  247 taaacaatattcattcattcaaattgataga 277  Q
    |||||||||||||||||||||||||||||||    
T  40883542 taaacaatattcattcattcaaattgataga 40883572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 46304313 - 46304351
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  46304313 acaaaaacaaaacgatattcattcattcaaattgataga 46304351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 48401562 - 48401524
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  48401562 acaaaaaataaacgatattcattcattcaaattgataga 48401524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 50981125 - 50981163
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  50981125 acaaaaaataaacgatattcattcattcaaattgataga 50981163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 51084259 - 51084297
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  51084259 acaaaaaataaacgatattcattcattcaaattgataga 51084297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 722
Target Start/End: Original strand, 8383285 - 8383318
Alignment:
Q  689 ataattcagtgtaattatacgtgtcggtgtcgga 722  Q
    ||||||||||||||||||| ||||||||||||||    
T  8383285 ataattcagtgtaattataagtgtcggtgtcgga 8383318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 772
Target Start/End: Original strand, 25093532 - 25093613
Alignment:
Q  691 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 772  Q
    ||||||||||||||||| |||||||||||||| |  |||| ||| | |||||||  |||  ||||||||| |||||| ||||    
T  25093532 aattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacactgaagcacttctaatctgaagagtgttcgtg 25093613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 696 - 777
Target Start/End: Original strand, 8833 - 8914
Alignment:
Q  696 agtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||| | |||||||||||||| | ||||||||| | |||| ||||||||||||||||||||||| |||||| ||||    
T  8833 agtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttca 8914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 688 - 777
Target Start/End: Complemental strand, 17841621 - 17841532
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||| |||||||||| | ||| |||||||||| | |||| |||| | |||||||||||||||||||| |||||||||||||| ||||    
T  17841621 cataatttagtgtaattacaagtgacggtgtcggacacgacatgtgtccgacactgagacacgcctaatccgaggagtgtccgtgcttca 17841532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 688 - 782
Target Start/End: Original strand, 28715322 - 28715416
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 782  Q
    |||||||||||||||||| | |||||||||||||| | ||||||||||| |||| | ||||||||||||  ||| ||||| |||| |||| ||||    
T  28715322 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcataggt 28715416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 28152125 - 28152214
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||||||||||| | |||||||||||||| | ||||||||| | |||| | |||| |||||||| ||||||||| |||| ||||    
T  28152125 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttca 28152214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 34595161 - 34595250
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||||||||||| | |||||||||||||| | |||||||||   |||| | ||||| ||||||| |||||||||||||| ||||    
T  34595161 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttca 34595250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 708 - 782
Target Start/End: Complemental strand, 10339126 - 10339052
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 782  Q
    ||||||||||||||| | ||||| ||| | |||||| ||||||||||||| |||||||||||||| |||| ||||    
T  10339126 cgtgtcggtgtcggacacgacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcataggt 10339052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 687 - 757
Target Start/End: Original strand, 29020938 - 29021008
Alignment:
Q  687 gcataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 757  Q
    ||||||||||||||||||||| ||||  |||||||| | ||||||||||| |||| ||| |||||||||||    
T  29020938 gcataattcagtgtaattataggtgtttgtgtcggacacgacacgtgttcgacaccgaggcacgcctaatc 29021008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 708 - 783
Target Start/End: Complemental strand, 8365520 - 8365445
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 783  Q
    ||||||||| ||||| | ||||||||| | |||||| ||||||||||||| ||||||| |||||| |||| |||||    
T  8365520 cgtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcataggtt 8365445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 688 - 782
Target Start/End: Original strand, 4877970 - 4878063
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 782  Q
    ||||||| ||| |||||| | |||||||||||||| | ||||| ||| | |||| | ||||||||||||| |||||||||||||| |||| ||||    
T  4877970 cataattaagtataattacaagtgtcggtgtcggacacgacacatgtccgacacag-gacacgcctaatccgaggagtgtccgtgcttcataggt 4878063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 688 - 778
Target Start/End: Complemental strand, 32978931 - 32978841
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcac 778  Q
    ||||||| |||||||||| | |||||||||||||| | ||||| ||| | |||| | |||||| ||||||  ||||||||||||| |||||    
T  32978931 cataattaagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttcac 32978841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 7378006 - 7378095
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||| |||||||||| |||||||||||||| | |||| |  | | |||| | |||||| |||||||||| |||||||||| ||||    
T  7378006 cataattcaatgtaattatatgtgtcggtgtcggacacgacatgcatccgacaccgggacacggctaatctgagaagtgtccgtgcttca 7378095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 31297117 - 31297078
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgatagaa 278  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  31297117 acaaaaacaaaacgatattcattcattcaaattgatagaa 31297078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 31851673 - 31851712
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgatagaa 278  Q
    |||||||| ||| |||||||||||||||||||||||||||    
T  31851673 acaaaaacaaaataatattcattcattcaaattgatagaa 31851712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 722
Target Start/End: Complemental strand, 7265625 - 7265591
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcgga 722  Q
    |||||||||||||||||||| ||||||||||||||    
T  7265625 cataattcagtgtaattatatgtgtcggtgtcgga 7265591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 248 - 278
Target Start/End: Complemental strand, 29744524 - 29744494
Alignment:
Q  248 aaacaatattcattcattcaaattgatagaa 278  Q
    |||||||||||||||||||||||||||||||    
T  29744524 aaacaatattcattcattcaaattgatagaa 29744494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 33052960 - 33052998
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  33052960 acaaaaacaaaacgatattcattcattcaaattgataga 33052998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 777
Target Start/End: Complemental strand, 6898313 - 6898224
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||| |||||||||| | |||||||||||||| | ||  ||||| | |||| || |||||||||||| || |||||| |||| ||||    
T  6898313 cataattaagtgtaattacaagtgtcggtgtcggacacgaagcgtgtccaacaccgaaacacgcctaatccgatgagtgttcgtgcttca 6898224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 726 - 783
Target Start/End: Complemental strand, 8776962 - 8776905
Alignment:
Q  726 gacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 783  Q
    ||||||||| | |||| ||||||| ||||||| |||||||||||||| |||| |||||    
T  8776962 gacacgtgtccgacaccgagacacacctaatccgaggagtgtccgtgcttcataggtt 8776905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 771
Target Start/End: Original strand, 17435259 - 17435320
Alignment:
Q  710 tgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgt 771  Q
    ||||| ||||||| | ||||||||||| |||||| |||||| |||||||||  |||||||||    
T  17435259 tgtcgatgtcggacacgacacgtgttcgacactgggacacgtctaatctgaaaagtgtccgt 17435320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 757
Target Start/End: Original strand, 19040379 - 19040448
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 757  Q
    |||||||||||||||||||| ||||| |||||||| | ||||| ||||| ||  || ||||| |||||||    
T  19040379 cataattcagtgtaattatatgtgtctgtgtcggacacgacacatgttcaactttgggacacacctaatc 19040448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 722
Target Start/End: Complemental strand, 21924966 - 21924933
Alignment:
Q  689 ataattcagtgtaattatacgtgtcggtgtcgga 722  Q
    ||||||||||||||||||| ||||||||||||||    
T  21924966 ataattcagtgtaattatatgtgtcggtgtcgga 21924933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 8e-17; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 688 - 777
Target Start/End: Complemental strand, 21576777 - 21576688
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||||||||||| | |||||| ||||||| | |||||||||   |||||| ||||||||||||| |||||||||||||| ||||    
T  21576777 cataattcagtgtaattacaagtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttca 21576688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 777
Target Start/End: Complemental strand, 21191088 - 21190999
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||||||||||| | |||||||||||||| |  |||||||| | || | | ||||||||||||| |||||||||||||| ||||    
T  21191088 cataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttca 21190999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 688 - 782
Target Start/End: Original strand, 43564908 - 43565002
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 782  Q
    ||||||| |||||||||||| |||||||||||||| | |||| |||| | || | | ||||||||||||| ||| |||||||||| |||| ||||    
T  43564908 cataatttagtgtaattataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcataggt 43565002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 690 - 757
Target Start/End: Complemental strand, 30502418 - 30502351
Alignment:
Q  690 taattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 757  Q
    |||||||||||||||||| |||||||||||||| | ||||| ||| | |||||| |||| ||||||||    
T  30502418 taattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatc 30502351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 690 - 757
Target Start/End: Complemental strand, 30542761 - 30542694
Alignment:
Q  690 taattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 757  Q
    |||||||||||||||||| |||||||||||||| | ||||| ||| | |||||| |||| ||||||||    
T  30542761 taattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatc 30542694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 687 - 772
Target Start/End: Complemental strand, 30099071 - 30098986
Alignment:
Q  687 gcataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 772  Q
    ||||||||| ||||||||||| |||||||||||||| | |||||||||   |||| | ||||||||| |||  |||||||| ||||    
T  30099071 gcataattctgtgtaattatatgtgtcggtgtcggatacgacacgtgtctgacacggggacacgccttatccaaggagtgttcgtg 30098986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 709 - 778
Target Start/End: Complemental strand, 39268609 - 39268540
Alignment:
Q  709 gtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcac 778  Q
    |||||||||| ||| | |||| |||| | |||||| ||||||||||||| |||||||||||||| |||||    
T  39268609 gtgtcggtgttggacacgacatgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcac 39268540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 708 - 777
Target Start/End: Original strand, 39698599 - 39698668
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||||||||| | |||| || | | |||| ||||||||||||||| |||||||||||||| ||||    
T  39698599 cgtgtcggtgtcggacacgacatgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttca 39698668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 586207 - 586172
Alignment:
Q  242 aaaactaaacaatattcattcattcaaattgataga 277  Q
    |||||||||| |||||||||||||||||||||||||    
T  586207 aaaactaaacgatattcattcattcaaattgataga 586172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 8984781 - 8984820
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgatagaa 278  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  8984781 acaaaaacaaaacgatattcattcattcaaattgatagaa 8984820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 10332340 - 10332379
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgatagaa 278  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  10332340 acaaaaacaaaacaatatccattcattcaaattgatagaa 10332379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 13007525 - 13007487
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  13007525 acaaaaacaaaacgatattcattcattcaaattgataga 13007487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 27576160 - 27576198
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  27576160 acaaaaacaaaacaatattcattcattcaaatcgataga 27576198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 722
Target Start/End: Complemental strand, 28588706 - 28588672
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcgga 722  Q
    |||||||||||||||||||| ||||||||||||||    
T  28588706 cataattcagtgtaattataggtgtcggtgtcgga 28588672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 715 - 777
Target Start/End: Original strand, 31084382 - 31084444
Alignment:
Q  715 gtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||| | ||||||||| | |||||| |||| |||||||| |||||||||||||| ||||    
T  31084382 gtgtcggacacgacacgtgtccgacactgggacatgcctaatccgaggagtgtccgtggttca 31084444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 777
Target Start/End: Complemental strand, 32766944 - 32766875
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||||||| ||| ||||||||| | ||||   || ||| ||||||||||||||||||||| ||||    
T  32766944 cgtgtcggtgtcgaaaacgacacgtgtccgacaccaggatacgtctaatctgaggagtgtccgtgcttca 32766875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 769
Target Start/End: Original strand, 42893387 - 42893468
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 769  Q
    |||||| ||||||||||| | ||||||||||| || |  |||||||| | ||||   |||||||||||| ||||||||||||    
T  42893387 cataatccagtgtaattacaagtgtcggtgtcagacacaacacgtgtccgacaccaggacacgcctaatatgaggagtgtcc 42893468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 688 - 777
Target Start/End: Complemental strand, 23293018 - 23292929
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||||| |||||| | |||||||||||||| | ||||||||| | |||| | ||||||||||||| |||||||||||||| ||||    
T  23293018 cataattcagtataattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttca 23292929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 687 - 782
Target Start/End: Original strand, 16073420 - 16073515
Alignment:
Q  687 gcataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggt 782  Q
    ||||||||||||||||||| | |||||||||||||| | || || ||| | ||||| |||||||||||||| ||||||||||| || |||| ||||    
T  16073420 gcataattcagtgtaattacaagtgtcggtgtcggacacgatacatgtccgacactaagacacgcctaatccgaggagtgtccatgcttcataggt 16073515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 696 - 777
Target Start/End: Complemental strand, 34306828 - 34306747
Alignment:
Q  696 agtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||| | |||||||||||||| | ||||||||| | |||| ||||||||||||||||||||| ||| |||| ||||    
T  34306828 agtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggaatgttcgtgcttca 34306747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 769
Target Start/End: Original strand, 49431053 - 49431134
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 769  Q
    |||||||||||||||||| | |||||||||||||| | ||||||||| | |||| | ||||||||| ||| |||||||||||    
T  49431053 cataattcagtgtaattaaaagtgtcggtgtcggacacgacacgtgtccaacaccgggacacgccttatccgaggagtgtcc 49431134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 688 - 768
Target Start/End: Original strand, 21945530 - 21945610
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtc 768  Q
    |||||||||||||||||| | |||||||||||||| ||||||| ||| | |||| |  |||||||||||| ||||||||||    
T  21945530 cataattcagtgtaattacaagtgtcggtgtcggacatgacacatgtccgacaccgcaacacgcctaatccgaggagtgtc 21945610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 688 - 777
Target Start/End: Complemental strand, 2362007 - 2361918
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||| |||||||||| | |||||||||||||| | ||| |||||   |||| ||||||| |||||||||| ||||||||||| ||||    
T  2362007 cataatttagtgtaattaaaagtgtcggtgtcggacacgactcgtgtctgacaccgagacacacctaatctgacgagtgtccgtgcttca 2361918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 708 - 777
Target Start/End: Original strand, 19312393 - 19312462
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||| ||||||| | ||||||||| | |||| |||||||| |||||||||| |||||||||||||||    
T  19312393 cgtgtcgttgtcggatacgacacgtgtccgacaccgagacacgtctaatctgagaagtgtccgtgtttca 19312462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 688 - 769
Target Start/End: Complemental strand, 28964280 - 28964199
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtcc 769  Q
    |||||||||||||||||| | ||||| |||||||| | ||||| | | | |||||| ||||||||||||| |||||||||||    
T  28964280 cataattcagtgtaattacaagtgtctgtgtcggacacgacacatatccgacactgggacacgcctaatccgaggagtgtcc 28964199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 688 - 772
Target Start/End: Complemental strand, 8423750 - 8423666
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtg 772  Q
    ||||||||||||||||||||  ||||||||||||| | ||||  ||| | |||| | ||||||||||||| ||| ||||||||||    
T  8423750 cataattcagtgtaattataaatgtcggtgtcggacacgacagctgtccgacaccgggacacgcctaatcggagaagtgtccgtg 8423666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 726 - 777
Target Start/End: Complemental strand, 14465059 - 14465008
Alignment:
Q  726 gacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||||| ||||    
T  14465059 gacacgtgttcgacactgggacacgtctaatctgaggagtgtccgtgcttca 14465008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 688 - 734
Target Start/End: Complemental strand, 54580055 - 54580009
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgt 734  Q
    |||||||||||||||||||| |||||||||||||| | |||||||||    
T  54580055 cataattcagtgtaattataagtgtcggtgtcggacacgacacgtgt 54580009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 725 - 778
Target Start/End: Original strand, 28084588 - 28084641
Alignment:
Q  725 tgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcac 778  Q
    |||||||||| | |||||| ||||||||||||| |||||||||||||| |||||    
T  28084588 tgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcac 28084641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 757
Target Start/End: Complemental strand, 40179668 - 40179599
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 757  Q
    |||||||||||||||||||| | |||||||||||| | ||||| ||||| ||||   |||||||||||||    
T  40179668 cataattcagtgtaattatatgcgtcggtgtcggacacgacacatgttcgacaccatgacacgcctaatc 40179599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 9048991 - 9048952
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgatagaa 278  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  9048991 acaaaaacaaaacgatattcattcattcaaattgatagaa 9048952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 784
Target Start/End: Complemental strand, 18513210 - 18513171
Alignment:
Q  745 gacacgcctaatctgaggagtgtccgtgtttcacaggttc 784  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  18513210 gacacgcctaatctgaggagtgtccgtgcttcataggttc 18513171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 36700537 - 36700502
Alignment:
Q  242 aaaactaaacaatattcattcattcaaattgataga 277  Q
    ||||| ||||||||||||||||||||||||||||||    
T  36700537 aaaacgaaacaatattcattcattcaaattgataga 36700502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 741 - 783
Target Start/End: Complemental strand, 3064907 - 3064865
Alignment:
Q  741 ctgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 783  Q
    ||||||||||||||||| |||||||||||||| |||| |||||    
T  3064907 ctgagacacgcctaatccgaggagtgtccgtgcttcataggtt 3064865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 32766831 - 32766793
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  32766831 acaaaaacaaaacaatattcattcattcaaatcgataga 32766793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 40065986 - 40066024
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  40065986 acaaaaacaaaacaatattcattcattcaaatcgataga 40066024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 44596976 - 44596938
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  44596976 acaaaaacaaaacaatattcattaattcaaattgataga 44596938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 56156440 - 56156478
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  56156440 acaaaaacaaaacgatattcattcattcaaattgataga 56156478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 782
Target Start/End: Complemental strand, 11596332 - 11596295
Alignment:
Q  745 gacacgcctaatctgaggagtgtccgtgtttcacaggt 782  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  11596332 gacacgcctaatctgaggagtgtccgtgcttcataggt 11596295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 777
Target Start/End: Complemental strand, 12895306 - 12895217
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||  ||||||||||| |||||||||||||| | |||| || | | |||  | ||||||||||||| ||||||||| |||| ||||    
T  12895306 cataattttgtgtaattataagtgtcggtgtcggacacgacatgtatccgacatcgggacacgcctaatccgaggagtgttcgtgcttca 12895217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 777
Target Start/End: Complemental strand, 35158017 - 35157928
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||| |||||||||||| ||||||||||| || | ||||| ||| | |||| |  |||||| ||||| ||| |||||||||| ||||    
T  35158017 cataatttagtgtaattataagtgtcggtgtctgacacgacacatgtccaacaccggaacacgcttaatccgagaagtgtccgtgcttca 35157928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 688 - 777
Target Start/End: Complemental strand, 2438751 - 2438662
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||||||||||| | |||||||||||||| | ||||| ||| | |||| | ||||||||||||| |||||||||||||| ||||    
T  2438751 cataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttca 2438662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 28596496 - 28596585
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||| |||||||||||||| |||||||||||||| | ||||||||| | |||||  ||||| ||||||| |||||||||||||| ||||    
T  28596496 cataagtcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttca 28596585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 708 - 777
Target Start/End: Original strand, 35056926 - 35056995
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||||||||| | ||||||||| | |||| || ||||||||||||||||||||||||||| ||||    
T  35056926 cgtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttca 35056995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 37559004 - 37559093
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||| |||||||| | ||||||||||||||  |||||||||| | |||| |  |||||| ||||| |||||||||||||| ||||    
T  37559004 cataattcaatgtaattacaagtgtcggtgtcggacttgacacgtgtccgacaccggtacacgcttaatccgaggagtgtccgtgcttca 37559093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 710 - 777
Target Start/End: Original strand, 26769571 - 26769638
Alignment:
Q  710 tgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||| ||||| | ||||||||| | |||||| ||||||||||||| |||||||||||||| ||||    
T  26769571 tgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 26769638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 710 - 768
Target Start/End: Original strand, 27084318 - 27084376
Alignment:
Q  710 tgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtc 768  Q
    ||||||||||||| | ||||||||| | |||| ||||||||||||||| ||||||||||    
T  27084318 tgtcggtgtcggacacgacacgtgtccaacaccgagacacgcctaatcggaggagtgtc 27084376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 777
Target Start/End: Complemental strand, 18841045 - 18840956
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||| |||||||||| | ||||||||||| || | ||||| ||| | |||| | ||||| ||||||| |||||||||||||| ||||    
T  18841045 cataattaagtgtaattacaagtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttca 18840956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 708 - 777
Target Start/End: Complemental strand, 30717531 - 30717462
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||| ||||||| | ||||||||||| |||||| || ||||||||||  ||||||||||||| ||||    
T  30717531 cgtgtcgttgtcggacacgacacgtgttcgacactgggatacgcctaatccaaggagtgtccgtgcttca 30717462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 29279358 - 29279394
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgata 275  Q
    ||||||||||||| |||||||||||||||||||||||    
T  29279358 acaaaaactaaacgatattcattcattcaaattgata 29279394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 767
Target Start/End: Original strand, 12224250 - 12224329
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgt 767  Q
    |||||| || |||||||| | |||||||||||||| | || |||||| | |||||| |||||||||||||  ||||||||    
T  12224250 cataatccaatgtaattacaagtgtcggtgtcggacacgatacgtgtccgacactgggacacgcctaatccaaggagtgt 12224329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 28261559 - 28261594
Alignment:
Q  242 aaaactaaacaatattcattcattcaaattgataga 277  Q
    |||| |||||||||||||||||||||||||||||||    
T  28261559 aaaaataaacaatattcattcattcaaattgataga 28261594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 708 - 783
Target Start/End: Original strand, 37419801 - 37419876
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttcacaggtt 783  Q
    ||||||||||||||| | ||  ||||| | |||| | ||||||||||||| |||||||||||||| |||| |||||    
T  37419801 cgtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcataggtt 37419876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 37994590 - 37994551
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgatagaa 278  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  37994590 acaaaaacaaaacgatattcattcattcaaattgatagaa 37994551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 738 - 777
Target Start/End: Original strand, 44635570 - 44635609
Alignment:
Q  738 acactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  44635570 acaccgagacacgcctaatctgaggagtgtccgtgcttca 44635609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 722
Target Start/End: Original strand, 5367219 - 5367253
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcgga 722  Q
    |||||||||||||||||||| ||||||||||||||    
T  5367219 cataattcagtgtaattatatgtgtcggtgtcgga 5367253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 691 - 777
Target Start/End: Original strand, 15972903 - 15972989
Alignment:
Q  691 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||||||||| | |||||||||||||| | ||||||||| | || | | ||||| ||||||| || || |||||||| ||||    
T  15972903 aattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacgccgggacacacctaatccgaagaatgtccgtgcttca 15972989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 722
Target Start/End: Complemental strand, 20242759 - 20242725
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcgga 722  Q
    |||||||||||||||||||| ||||||||||||||    
T  20242759 cataattcagtgtaattatatgtgtcggtgtcgga 20242725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 766
Target Start/End: Complemental strand, 37411276 - 37411198
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtg 766  Q
    ||||||||||||| |||||| |||||| ||||| | | ||| ||||| | |||||| |||||||||| || ||||||||    
T  37411276 cataattcagtgtgattatatgtgtcgatgtcgaacacgacgcgtgtccgacactgggacacgcctagtccgaggagtg 37411198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 37876399 - 37876437
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  37876399 acaaaaacaaaacgatattcattcattcaaattgataga 37876437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 41328046 - 41328008
Alignment:
Q  239 acaaaaactaaacaatattcattcattcaaattgataga 277  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  41328046 acaaaaacaaaacgatattcattcattcaaattgataga 41328008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 773
Target Start/End: Original strand, 5040761 - 5040846
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgt 773  Q
    ||||||||| |||||||| | |||||||||||||| | |||| |||| | || | | |||||||||| ||  ||||||||||||||    
T  5040761 cataattcaatgtaattacaagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctagtccaaggagtgtccgtgt 5040846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 757
Target Start/End: Complemental strand, 29176525 - 29176456
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatc 757  Q
    |||||||||||||||||||| |||| ||||| ||| | | ||| ||| | |||||||||||| |||||||    
T  29176525 cataattcagtgtaattataagtgttggtgttggacacggcacatgtccgacactgagacacacctaatc 29176456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 722
Target Start/End: Complemental strand, 34691836 - 34691803
Alignment:
Q  689 ataattcagtgtaattatacgtgtcggtgtcgga 722  Q
    ||||||||||||||||||| ||||||||||||||    
T  34691836 ataattcagtgtaattatatgtgtcggtgtcgga 34691803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 722
Target Start/End: Complemental strand, 34714248 - 34714215
Alignment:
Q  689 ataattcagtgtaattatacgtgtcggtgtcgga 722  Q
    ||||||||||||||||||| ||||||||||||||    
T  34714248 ataattcagtgtaattatatgtgtcggtgtcgga 34714215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 777
Target Start/End: Complemental strand, 34994014 - 34993925
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||| |||||||||| ||||| |||||| | | |||| |||| | |||||| ||||||||||||   |||||||| |||| ||||    
T  34994014 cataattcaatgtaattatatgtgtcagtgtcgaacacgacatgtgtccgacactgggacacgcctaattcaaggagtgttcgtgcttca 34993925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 777
Target Start/End: Complemental strand, 38117191 - 38117102
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||| ||| ||||||||| | |||| ||||||||| |  |||||||| | |||| | ||||||||||||| |||| ||||||||| ||||    
T  38117191 catacttcggtgtaattacaagtgttggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttca 38117102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 720
Target Start/End: Original strand, 44860346 - 44860379
Alignment:
Q  687 gcataattcagtgtaattatacgtgtcggtgtcg 720  Q
    ||||||||||||||||||||| ||||||||||||    
T  44860346 gcataattcagtgtaattatatgtgtcggtgtcg 44860379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 691 - 777
Target Start/End: Complemental strand, 491 - 405
Alignment:
Q  691 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||||||||||||| | |||||||||||||| | ||| ||||| | |||| | ||||| ||||||| |||||||||||||| ||||    
T  491 aattcagtgtaattacaagtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttca 405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 691 - 777
Target Start/End: Original strand, 3338 - 3424
Alignment:
Q  691 aattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||| |||||||||| | ||||| |||||||| | |||||||| |  |||||| ||||||||||||| |||||||||||||| ||||    
T  3338 aattaagtgtaattacaagtgtcagtgtcggacaagacacgtggtggacactgggacacgcctaatccgaggagtgtccgtgcttca 3424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 70305 - 70394
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||||||||||||| |||||||||||||| | ||||||||| | ||||   |||| |||||||| || |||||| |||| ||||    
T  70305 cataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatccgatgagtgttcgtgcttca 70394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 698 - 777
Target Start/End: Complemental strand, 5058 - 4979
Alignment:
Q  698 tgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||| | |||||||||||||| | ||||||||| | ||| ||||||| |||||||| |||||||||| ||| ||||    
T  5058 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacattgagacatgcctaatccgaggagtgtctgtgcttca 4979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 708 - 777
Target Start/End: Complemental strand, 263373 - 263304
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||||| || | ||||||||||| | ||  |||||||||||||| |||||||||||||| ||||    
T  263373 cgtgtcggtgtcagacacgacacgtgttcgataccaagacacgcctaatccgaggagtgtccgtggttca 263304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 777
Target Start/End: Original strand, 14557 - 14643
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    |||||||||||||||||| | |||   |||||||| | ||||||||| | |||| |||||||||||||||  |||||||| |||| ||||    
T  14557 cataattcagtgtaattacaagtg---gtgtcggacacgacacgtgtccgacaccgagacacgcctaatcgaaggagtgtacgtgcttca 14643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 734
Target Start/End: Complemental strand, 45562 - 45516
Alignment:
Q  688 cataattcagtgtaattatacgtgtcggtgtcggaaatgacacgtgt 734  Q
    |||||||||||||||||| | |||||||||||||| | |||||||||    
T  45562 cataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgt 45516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 777
Target Start/End: Original strand, 241652 - 241721
Alignment:
Q  708 cgtgtcggtgtcggaaatgacacgtgttccacactgagacacgcctaatctgaggagtgtccgtgtttca 777  Q
    ||||| ||||||||| | ||||||||| | |||| | ||||||||||||| ||| |||||||||| ||||    
T  241652 cgtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 241721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University