View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19453_low_11 (Length: 397)
Name: NF19453_low_11
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 34426443 - 34426823
Alignment:
| Q |
1 |
cattcattaaaataagacatggattggcagacactaaaagaatcaaatatatcccacaaacaataaacagacaaaatttcatccacctcactgtttatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34426443 |
cattcattaaaataagacatggattggcagacactaaaagaatcaaatatatcccacaaacaataaacagacaaaatttcatccacctcactgtttatag |
34426542 |
T |
|
| Q |
101 |
aagactgcataacaatgaaacaaaatagtacctcaaattcaaagcaacnnnnnnnnnnnnnnnngacagtctcagttcccaaataattgagatgatacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34426543 |
aagactgcataacaatgaaacaaaataggacctcaaattcaaagcaacaaaaaaaaaccaaaaagacagtctcagttcccaaattattgagatgatacaa |
34426642 |
T |
|
| Q |
201 |
agtggtattgatactgaaactagcactgttgtgaaaatttctgatcgaaaatatcttgaggcatgtaaactattccaagttctttttatctgtgactatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34426643 |
agtggtattgatactgaaactagcactgttgtgaaaatttctgatcgaaaatatcttgaggcatgtaaactattccaagttctttttatctgtgactatg |
34426742 |
T |
|
| Q |
301 |
tatgagagtggcaaaagactcaaatctatgctattaagaatctgaaaatatctaaactaataatcgagtctgagaccattg |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34426743 |
tatgagagtggcaaaagactcaaatctatgctattaagaatctgaaaatatctaaactaataatcgagtctgagaccattg |
34426823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University