View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_low_12 (Length: 392)
Name: NF19453_low_12
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 25099284 - 25099656
Alignment:
| Q |
1 |
tggatttattgcagtgtattgtggagatagtaacatatggcgataaacaagatccgttcatttttgagtatgaatctgttctggaaattttgtttttata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
25099284 |
tggatttattgcagtgtattgtggagatagtaacatatggcgataaacaagatccgttaatttttgagtatgaatttgttctggaaattttgtttttata |
25099383 |
T |
|
| Q |
101 |
atattgatcttattttagtgatgataatttgtgactgatagtaaacatttagatgtttcatggaacaccaagtgctcgcggagtttgttcgcatacttaa |
200 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25099384 |
atatcgatcttattttggtgatgataatttgtgactgatagtaaacatttagatgtttcatggaacaccaagtgctcgcggagtttgttcgcatacttaa |
25099483 |
T |
|
| Q |
201 |
gaccagtgaaatttcaaacattgaggcaccgctgcttcagtatctgagcataatgattcaaaacatggatagtgaacaagcaatttgtaagatggttact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25099484 |
gaccagtgaaatttcaaacattgaggcaccgctgcttcagtatctgagcataatgattcaaaacatggatagtgaacaagcaatttgtaagatggttact |
25099583 |
T |
|
| Q |
301 |
atttcttgatgtctttgtctaagcttgttaatttctaagtttaactcaaattgatattc-attgtacaaatca |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25099584 |
atttcttgatgtctttgtctaagcttgttaatttctaagtttaactcaaattgatattcaattgtacaaatca |
25099656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 372
Target Start/End: Complemental strand, 619551 - 619512
Alignment:
| Q |
333 |
ttctaagtttaactcaaattgatattcattgtacaaatca |
372 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |
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| T |
619551 |
ttctaagtttaactcaaattaatattcattgtacaaatca |
619512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 372
Target Start/End: Original strand, 35408253 - 35408292
Alignment:
| Q |
333 |
ttctaagtttaactcaaattgatattcattgtacaaatca |
372 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
35408253 |
ttctaagtttaactcaaattaatattcattgtacaaatca |
35408292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 372
Target Start/End: Original strand, 34587684 - 34587723
Alignment:
| Q |
333 |
ttctaagtttaactcaaattgatattcattgtacaaatca |
372 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
34587684 |
ttctaagtttaactcaaattaatattcattgtacaaatca |
34587723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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