View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19453_low_15 (Length: 374)

Name: NF19453_low_15
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19453_low_15
NF19453_low_15
[»] chr5 (4 HSPs)
chr5 (1-333)||(24081515-24081847)
chr5 (154-333)||(29027946-29028126)
chr5 (288-332)||(29028883-29028927)
chr5 (175-251)||(11167872-11167948)
[»] chr7 (2 HSPs)
chr7 (162-251)||(21939301-21939389)
chr7 (178-254)||(41415636-41415712)
[»] chr8 (1 HSPs)
chr8 (183-251)||(18896426-18896494)
[»] chr1 (2 HSPs)
chr1 (187-251)||(35820103-35820167)
chr1 (203-251)||(23395112-23395160)
[»] chr3 (2 HSPs)
chr3 (183-225)||(36859779-36859821)
chr3 (187-255)||(19404393-19404461)
[»] scaffold0007 (1 HSPs)
scaffold0007 (183-252)||(201305-201374)


Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 24081515 - 24081847
Alignment:
Q  1 actgctactccttatgtgttatgagagaaatgcctgatatttgtgtagtaaaagtttaattacagtagttgagtcatgtaattcaaatagtggctgagaa 100  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24081515 actgctactccatatgtgtcatgagagaaatgcgtgatatttgtgtagtaaaagtttaattacagtagttgagtcatgtaattcaaatagtggctgagaa 24081614  T
Q  101 aattgtcattacatattgctgcttgtgtgaagttacgatttctagtgcaaaagggggctggacttagggggttggggttgtaattgtttttcatagaggg 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| |    
T  24081615 aattgccattacatattgctgcttgtgtgaagttacgatttctagtgcaaaagggggctggacttatggggttggggttgtaattgttttttattgagag 24081714  T
Q  201 ctaaaatcgcaagtttgtgatacttggggaaccaaaactgctattaagccttttttatattgaaagtagatatctgaacaattgaactcaagtatattta 300  Q
    |||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24081715 ctaaaatcccaagttcgtgatacttagggaaccaaaactgctattaagccttttttatattgaaagtagatatctgaacaattgaactcaagtatattta 24081814  T
Q  301 cgccatcattatcgatcccctaatcaacatgaa 333  Q
    |||||||||||||||||||||||||| ||||||    
T  24081815 cgccatcattatcgatcccctaatcagcatgaa 24081847  T

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Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 154 - 333
Target Start/End: Original strand, 29027946 - 29028126
Alignment:
Q  154 ggggctggacttagggggttggggttgtaattgtttttcatagagggctaaaatcgcaagtttgtgatacttggggaaccaaaactgctattaagccttt 253  Q
    |||| |||||||||||| ||||||| |||||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||||    
T  29027946 ggggttggacttagggg-ttggggtcgtaattgttttttatagggggctaaaatcacaagtttgtgatacttagggaaccaaaagtgctactaagccttt 29028044  T
Q  254 t--ttatattgaaagtagatatctgaacaattgaactcaagtatatttacgccatcattatcgatcccctaatcaacatgaa 333  Q
    |  ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29028045 tttttatattgaaattagatatctgaataattgaactcaagtatatttatgccatcattatcgatcccctaatcaacatgaa 29028126  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 29028883 - 29028927
Alignment:
Q  288 tcaagtatatttacgccatcattatcgatcccctaatcaacatga 332  Q
    ||||||||||||||||||||| ||||||||| || ||||||||||    
T  29028883 tcaagtatatttacgccatcactatcgatcctctgatcaacatga 29028927  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 11167948 - 11167872
Alignment:
Q  175 gggttgtaattgtttttcatagagggctaaaatcgcaagtttgtgatacttggggaaccaaaactgctattaagcct 251  Q
    |||||||||||  ||||| ||| |||| |||||| ||||||||||||||||  ||   ||||||| |||||||||||    
T  11167948 gggttgtaatttattttcttagggggccaaaatcacaagtttgtgatacttaaggggtcaaaactactattaagcct 11167872  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 21939301 - 21939389
Alignment:
Q  162 acttagggggttggggttgtaattgtttttcatagagggctaaaatcgcaagtttgtgatacttggggaaccaaaactgctattaagcct 251  Q
    ||||||||||||||  ||||||||||||||  ||| |||| |||||||||| || ||||||||| |||  ||||||||||||||||||||    
T  21939301 acttagggggttgga-ttgtaattgttttttttagggggccaaaatcgcaacttcgtgatacttagggggccaaaactgctattaagcct 21939389  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 41415712 - 41415636
Alignment:
Q  178 ttgtaattgtttttcatagagggctaaaatcgcaagtttgtgatacttggggaaccaaaactgctattaagcctttt 254  Q
    |||| ||||||||| |||  |||| ||||||||||| ||||||||||| ||  ||||||||||| ||||||| ||||    
T  41415712 ttgttattgttttttataaggggccaaaatcgcaagattgtgatacttaggtgaccaaaactgcaattaagcttttt 41415636  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 18896494 - 18896426
Alignment:
Q  183 attgtttttcatagagggctaaaatcgcaagtttgtgatacttggggaaccaaaactgctattaagcct 251  Q
    ||||||||| |||| || | ||||||||||| ||||||| ||| ||| ||||||||||| |||||||||    
T  18896494 attgttttttataggggaccaaaatcgcaagattgtgatgcttaggggaccaaaactgcaattaagcct 18896426  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 35820103 - 35820167
Alignment:
Q  187 tttttcatagagggctaaaatcgcaagtttgtgatacttggggaaccaaaactgctattaagcct 251  Q
    ||||| |||| |||| ||||||||||| ||||||||||| |||  |||||||||| |||||||||    
T  35820103 ttttttatagggggccaaaatcgcaagattgtgatacttagggggccaaaactgcaattaagcct 35820167  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 23395160 - 23395112
Alignment:
Q  203 aaaatcgcaagtttgtgatacttggggaaccaaaactgctattaagcct 251  Q
    ||||||||||| ||||||||||| ||| ||||||||| | |||||||||    
T  23395160 aaaatcgcaagattgtgatacttaggggaccaaaactacaattaagcct 23395112  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 36859779 - 36859821
Alignment:
Q  183 attgtttttcatagagggctaaaatcgcaagtttgtgatactt 225  Q
    ||||||||| ||||||||| ||||||||||||| |||||||||    
T  36859779 attgttttttatagagggccaaaatcgcaagttcgtgatactt 36859821  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 19404461 - 19404393
Alignment:
Q  187 tttttcatagagggctaaaatcgcaagtttgtgatacttggggaaccaaaactgctattaagccttttt 255  Q
    |||||| ||||||||||||||||||| || |||| | || ||| || ||||||| |||||||| |||||    
T  19404461 tttttcttagagggctaaaatcgcaacttcgtgaaagttaggggacgaaaactgttattaagctttttt 19404393  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 201374 - 201305
Alignment:
Q  183 attgtttttcatagagggctaaaatcgcaagtttgtgatacttggggaaccaaaactgctattaagcctt 252  Q
    ||||||||| | ||||||  ||||||||||| ||||||||||| |||   ||||||||| ||||||||||    
T  201374 attgttttttacagagggtcaaaatcgcaagattgtgatacttagggggtcaaaactgcaattaagcctt 201305  T

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