View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_low_16 (Length: 370)
Name: NF19453_low_16
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 32 - 353
Target Start/End: Original strand, 28687342 - 28687663
Alignment:
| Q |
32 |
ttcaaattatcgggtgccaaggcaataactaaattatcaatcatggaattttgtagcagaattttatgggaacattgctcatatacatgcacaaaagccc |
131 |
Q |
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| T |
28687342 |
ttcaaattatcgggtgccaaggcaataactaaattatcaatcatggaattttgtagcagaattttatgggaacattgctcatatacatgcacaaaagccc |
28687441 |
T |
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| Q |
132 |
tcttttttggaaaagaataaaaattttggttttaaacactttggttcgaaaggatactcacacaactcatttgggcaaccattggcatttttacagttaa |
231 |
Q |
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| T |
28687442 |
tcttttttggaaaagaataaaaattttggttttaaacactttggttcgaaaggatactcacacaactcatttgggcaaccattggcatttttacagttaa |
28687541 |
T |
|
| Q |
232 |
cacgatctattgtaatgtatggtttcaaaggaaactcacacaacttgttttggcaaccatagccttctttacatttaacacgacctttgtaatgaaaaaa |
331 |
Q |
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| T |
28687542 |
cacgatctattgtaatgtatggtttcaaaggaaactcacacaacttgttttggcaaccatagccttctttacatttaacacgacctttgtaatgaaaaaa |
28687641 |
T |
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| Q |
332 |
gagagtaaatgaatgttagttg |
353 |
Q |
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|||||||||||||||||||||| |
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| T |
28687642 |
gagagtaaatgaatgttagttg |
28687663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 35 - 349
Target Start/End: Original strand, 28718803 - 28719118
Alignment:
| Q |
35 |
aaattatcgggtgccaaggcaataactaaattatcaatcatggaattttgtagcagaattttatgggaaca-ttgctcatatacatgcacaaaagccctc |
133 |
Q |
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| T |
28718803 |
aaattattgggtgctaacgcaataactaaatgatagct-atggaattttgtagcagaattttatgggcacaattgctcaattacatgcacaaaagccttc |
28718901 |
T |
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| Q |
134 |
ttttttggaaaagaataaaaattttggttttaaacactttggttcgaaaggatactcacacaactcatttgggcaaccattggcatttttacagttaaca |
233 |
Q |
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| T |
28718902 |
ttttgtggaaaagaataaaaaataaggtttcacacactttggaaacaaaggaagcttacacaacttgagttcgcaaccagagtcatttttacatgtaaca |
28719001 |
T |
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| Q |
234 |
cgatctattgtaatgtatggtttcaaaggaaactcacacaacttgttttggcaaccatagccttctttacatttaacacgacct-ttgtaatgaaaaaag |
332 |
Q |
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||| || || |||||||||||||||||||||||| ||| |||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||| |
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| T |
28719002 |
cgacctgttctaatgtatggtttcaaaggaaactgacatgacttgttttggcaaccatagtcttttatacatttaacacgacctgttgtaatgaaaaaag |
28719101 |
T |
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| Q |
333 |
agagtaaatgaatgtta |
349 |
Q |
| |
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||| ||||||||||||| |
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| T |
28719102 |
agaataaatgaatgtta |
28719118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 32 - 353
Target Start/End: Original strand, 28701267 - 28701588
Alignment:
| Q |
32 |
ttcaaattatcgggtgccaaggcaataactaaattatcaatcatggaattttgtagcagaattttatgggaacattgctcatatacatgcacaaaagccc |
131 |
Q |
| |
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|||||||||||||||||||| |||||||| |||| ||| ||||||||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
28701267 |
ttcaaattatcgggtgccaatgcaataacaaaatgatcgctcatggaattttgcagcagaattttatcggaaccttgctcatacacatgcacaaaagccc |
28701366 |
T |
|
| Q |
132 |
tcttttttggaaaagaataaaaattttggttttaaacactttggttcgaaaggatactcacacaactcatt---tgggcaaccattggcatttttacagt |
228 |
Q |
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| T |
28701367 |
tcttttgtggtcaggaataaaaaataaggttttaggcactttggaatccaacgaccctcacacaagttgttgccttcacaaccagagtcgtctttacatt |
28701466 |
T |
|
| Q |
229 |
taacacgatctattgtaatgtatggtttcaaaggaaactcacacaacttgttttggcaaccatagccttctttacatttaacacgacct-ttgtaatgaa |
327 |
Q |
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||| ||||| | || |||||| ||||||||||||||||||| | |||||||||||| ||||||| |||||||| |||||||||||||| |||||||||| |
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| T |
28701467 |
taatacgatatgttctaatgtgtggtttcaaaggaaactcattccacttgttttggccaccatagtcttctttatatttaacacgacctgttgtaatgaa |
28701566 |
T |
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| Q |
328 |
aaaagagagtaaatgaatgttagttg |
353 |
Q |
| |
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| T |
28701567 |
a----agagtaaatgaatgttagttg |
28701588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 28711665 - 28711787
Alignment:
| Q |
90 |
gaattttatgggaacattgctcatatacatgcacaaaagccctcttttttggaaaagaataaaaattttggttttaaacactttggttcgaaaggatact |
189 |
Q |
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|||||||||||| ||| |||||| |||| ||||||||| |||||| |||||| ||||||||| | |||||||||||| |||| |||||| ||| |
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| T |
28711665 |
gaattttatgggcacaatgctcaattacaatgacaaaagccgtcttttgtggaaaggaataaaaaataaggttttaaacacactggtatcaaaggaaact |
28711764 |
T |
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| Q |
190 |
cacacaactcatttgggcaacca |
212 |
Q |
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|||||||||||||| |||||||| |
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| T |
28711765 |
cacacaactcattttggcaacca |
28711787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 317
Target Start/End: Original strand, 28711748 - 28711814
Alignment:
| Q |
251 |
tggtttcaaaggaaactcacacaacttgttttggcaaccatagccttctttacatttaacacgacct |
317 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||||||| || ||||||||||||||| ||||||| |
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| T |
28711748 |
tggtatcaaaggaaactcacacaactcattttggcaaccagagtcttctttacatttaatacgacct |
28711814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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