View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19453_low_17 (Length: 341)

Name: NF19453_low_17
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19453_low_17
NF19453_low_17
[»] chr7 (2 HSPs)
chr7 (130-324)||(24508495-24508689)
chr7 (13-123)||(24508359-24508469)
[»] chr8 (2 HSPs)
chr8 (141-276)||(9942738-9942873)
chr8 (212-277)||(35620060-35620124)
[»] scaffold0015 (1 HSPs)
scaffold0015 (140-267)||(29912-30039)
[»] chr1 (1 HSPs)
chr1 (143-271)||(18008460-18008588)
[»] chr5 (2 HSPs)
chr5 (209-271)||(26498339-26498401)
chr5 (212-267)||(18482403-18482458)
[»] chr3 (2 HSPs)
chr3 (209-271)||(55312434-55312496)
chr3 (209-271)||(8838498-8838560)
[»] chr2 (4 HSPs)
chr2 (209-271)||(13133058-13133120)
chr2 (212-277)||(13486810-13486875)
chr2 (138-276)||(28154203-28154341)
chr2 (213-277)||(31482358-31482422)
[»] scaffold0012 (1 HSPs)
scaffold0012 (140-276)||(176059-176195)
[»] chr4 (3 HSPs)
chr4 (234-271)||(14033789-14033826)
chr4 (234-271)||(14041314-14041351)
chr4 (213-266)||(23165216-23165269)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 130 - 324
Target Start/End: Original strand, 24508495 - 24508689
Alignment:
Q  130 caagttgttaccagtttcatctaaagaccaagttgcagatttcttcactaaagcattacttcttcaaccattcggcaatttgctatccaaattggggatg 229  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||    
T  24508495 caagttgttaccagtttcatctaaagaccaagttgtagatttcttcactaaagcattacttcctcaatcattcagcaatttgctatccaaattggggatg 24508594  T
Q  230 atatacatctaccaacctccaacttgtgggaggatattacaccatgaaaaaacttagaagtataacttgtagtacaagttattatagtgtactac 324  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  24508595 atatacatctaccaatctccaacttgtgggaggatattacaccatgagaaaacttagtagtataacttgtagtacaagttattatagtgtactac 24508689  T

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Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 24508359 - 24508469
Alignment:
Q  13 aatatctgagttgtaaatatcttttgtagataaaatttgtatcacattaaagctataaataatgtctataattcttaaccaaacatttggagacagatcg 112  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24508359 aatatctaagttgtaaatatcttttttagataaaatttgtatcacattaaagctataaataatgtctataattcttaaccaaacatttggagacagattg 24508458  T
Q  113 tcacattgcaa 123  Q
    | |||||||||    
T  24508459 ttacattgcaa 24508469  T

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Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 141 - 276
Target Start/End: Complemental strand, 9942873 - 9942738
Alignment:
Q  141 cagtttcatctaaagaccaagttgcagatttcttcactaaagcattacttcttcaaccattcggcaatttgctatccaaattggggatgatatacatcta 240  Q
    |||| ||||| ||||| ||||||||||| || ||||| ||||| || ||||  |||||||||  ||||||||||||||| |||||||||||| | |||||    
T  9942873 cagtctcatccaaagatcaagttgcagactttttcaccaaagctttgcttccacaaccattcaacaatttgctatccaagttggggatgatagatatcta 9942774  T
Q  241 ccaacctccaacttgtgggaggatattacaccatga 276  Q
    ||| |||||||| |||||| ||||||||||||||||    
T  9942773 ccagcctccaacatgtggggggatattacaccatga 9942738  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 35620060 - 35620124
Alignment:
Q  212 ctatccaaattggggatgatatacatctaccaacctccaacttgtgggaggatattacaccatgaa 277  Q
    |||||||| ||||||||| || | |||||||||||| ||||||||||| || |||| |||||||||    
T  35620060 ctatccaagttggggatgttagatatctaccaaccttcaacttgtggg-gggtattgcaccatgaa 35620124  T

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Target: scaffold0015 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 267
Target Start/End: Original strand, 29912 - 30039
Alignment:
Q  140 ccagtttcatctaaagaccaagttgcagatttcttcactaaagcattacttcttcaaccattcggcaatttgctatccaaattggggatgatatacatct 239  Q
    ||||||||||| ||||| ||| ||||| ||||||| || ||||||||||||| ||||  ||||  ||||||| ||||||| |||||||||||| | ||||    
T  29912 ccagtttcatcaaaagatcaaattgcaaatttctttaccaaagcattacttcctcaattattcaacaatttgttatccaagttggggatgatagatatct 30011  T
Q  240 accaacctccaacttgtgggaggatatt 267  Q
    |||| || ||||||||||||||||||||    
T  30012 accacccgccaacttgtgggaggatatt 30039  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 143 - 271
Target Start/End: Original strand, 18008460 - 18008588
Alignment:
Q  143 gtttcatctaaagaccaagttgcagatttcttcactaaagcattacttcttcaaccattcggcaatttgctatccaaattggggatgatatacatctacc 242  Q
    |||||| | ||||||||| ||||||| ||||| ||||| || || ||||  |||||||||  ||||||| ||||||| | || ||||||||| |||||||    
T  18008460 gtttcaacaaaagaccaaattgcagacttctttactaaggctttgcttcgacaaccattcaacaatttgttatccaagtcggagatgatatatatctacc 18008559  T
Q  243 aacctccaacttgtgggaggatattacac 271  Q
    | |||||||||||| || |||||||||||    
T  18008560 agcctccaacttgtagggggatattacac 18008588  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 26498339 - 26498401
Alignment:
Q  209 ttgctatccaaattggggatgatatacatctaccaacctccaacttgtgggaggatattacac 271  Q
    ||||| ||||| ||||||||| || |||||||||| ||||||||||||||| |||||||||||    
T  26498339 ttgctttccaagttggggatgttagacatctaccaccctccaacttgtggggggatattacac 26498401  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 18482458 - 18482403
Alignment:
Q  212 ctatccaaattggggatgatatacatctaccaacctccaacttgtgggaggatatt 267  Q
    |||||||| ||||||||| |||| |||||||| ||||||||||||||| |||||||    
T  18482458 ctatccaagttggggatgttatatatctaccatcctccaacttgtggggggatatt 18482403  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 55312434 - 55312496
Alignment:
Q  209 ttgctatccaaattggggatgatatacatctaccaacctccaacttgtgggaggatattacac 271  Q
    ||||| ||||| ||||||||| || |||||||||| ||||||||||||||| |||||||||||    
T  55312434 ttgctttccaagttggggatgttagacatctaccaccctccaacttgtggggggatattacac 55312496  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 8838498 - 8838560
Alignment:
Q  209 ttgctatccaaattggggatgatatacatctaccaacctccaacttgtgggaggatattacac 271  Q
    ||||| ||||| ||||||||| || | || ||||| ||||||||||||||| |||||||||||    
T  8838498 ttgctttccaagttggggatgttagatatttaccaccctccaacttgtggggggatattacac 8838560  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 13133058 - 13133120
Alignment:
Q  209 ttgctatccaaattggggatgatatacatctaccaacctccaacttgtgggaggatattacac 271  Q
    ||||| ||||| ||||||||| || |||||||||| ||||||||||||||| |||||||||||    
T  13133058 ttgctttccaagttggggatgttagacatctaccaccctccaacttgtggggggatattacac 13133120  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 13486875 - 13486810
Alignment:
Q  212 ctatccaaattggggatgatatacatctaccaacctccaacttgtgggaggatattacaccatgaa 277  Q
    |||||||| ||||||||| |  | |||||||||||||||||||||||||||||||| ||| |||||    
T  13486875 ctatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcacaatgaa 13486810  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 276
Target Start/End: Complemental strand, 28154341 - 28154203
Alignment:
Q  138 taccagtttcatctaaagaccaagttgcagatttcttcactaaagcattacttcttcaaccattcggcaatttgctatccaaattggggatgatatacat 237  Q
    |||||||||| || ||  ||||| |||||||||| ||||| ||  |  |||||| ||||||||||  |||| | |||||||| ||||||||| |  | ||    
T  28154341 taccagtttcttcaaagtaccaaattgcagattttttcaccaagtccctacttcctcaaccattcaacaatcttctatccaagttggggatggtcaatat 28154242  T
Q  238 ctaccaacctccaacttgtgggaggatattacaccatga 276  Q
     | ||||||||||||||||||| || |||||| ||||||    
T  28154241 atgccaacctccaacttgtggggggctattacgccatga 28154203  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 31482422 - 31482358
Alignment:
Q  213 tatccaaattggggatgatatacatctaccaacctccaacttgtgggaggatattacaccatgaa 277  Q
    ||||||| ||||| ||  || |||| ||||| ||||||||||||||| ||||||| |||||||||    
T  31482422 tatccaagttgggtatagtagacatttaccaccctccaacttgtggggggatattgcaccatgaa 31482358  T

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Target: scaffold0012 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 276
Target Start/End: Complemental strand, 176195 - 176059
Alignment:
Q  140 ccagtttcatctaaagaccaagttgcagatttcttcactaaagcattacttcttcaaccattcggcaatttgctatccaaattggggatgatatacatct 239  Q
    |||||||| || ||||| |||||||||||||  || | |||  |  |||||| ||||||||||  |||| | |||||||| ||||||||| |  |||| |    
T  176195 ccagtttcttcaaaagatcaagttgcagattattttagtaagtccctacttcctcaaccattcaacaatcttctatccaagttggggatggtcaacatat 176096  T
Q  240 accaacctccaacttgtgggaggatattacaccatga 276  Q
    |||||||||||  |||| || || |||||||||||||    
T  176095 accaacctccactttgttgggggctattacaccatga 176059  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 14033789 - 14033826
Alignment:
Q  234 acatctaccaacctccaacttgtgggaggatattacac 271  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  14033789 acatctaccaacctccatcttgtggggggatattacac 14033826  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 14041314 - 14041351
Alignment:
Q  234 acatctaccaacctccaacttgtgggaggatattacac 271  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  14041314 acatctaccaacctccatcttgtggggggatattacac 14041351  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 23165269 - 23165216
Alignment:
Q  213 tatccaaattggggatgatatacatctaccaacctccaacttgtgggaggatat 266  Q
    ||||||| || ||| ||||| |||| ||||||||||||||||||||| ||||||    
T  23165269 tatccaagttagggttgataaacatttaccaacctccaacttgtggggggatat 23165216  T

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