View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19453_low_2 (Length: 567)

Name: NF19453_low_2
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19453_low_2
NF19453_low_2
[»] chr3 (7 HSPs)
chr3 (204-557)||(39704171-39704522)
chr3 (18-204)||(39702992-39703178)
chr3 (30-204)||(22509614-22509788)
chr3 (30-204)||(39621954-39622128)
chr3 (79-152)||(8425347-8425420)
chr3 (87-152)||(19972052-19972117)
chr3 (82-154)||(54788854-54788926)
[»] chr5 (7 HSPs)
chr5 (30-204)||(23121011-23121185)
chr5 (30-204)||(14009505-14009679)
chr5 (30-201)||(28313318-28313489)
chr5 (82-163)||(15155158-15155239)
chr5 (87-147)||(19676980-19677040)
chr5 (88-154)||(35635101-35635167)
chr5 (88-154)||(38395162-38395228)
[»] chr4 (10 HSPs)
chr4 (18-204)||(42883634-42883820)
chr4 (30-204)||(14461576-14461750)
chr4 (30-204)||(2664814-2664988)
chr4 (93-204)||(9474981-9475092)
chr4 (79-152)||(55405017-55405090)
chr4 (149-204)||(52648320-52648375)
chr4 (90-152)||(16401058-16401120)
chr4 (82-163)||(37058043-37058124)
chr4 (79-152)||(53816246-53816319)
chr4 (79-131)||(43335457-43335509)
[»] chr7 (5 HSPs)
chr7 (30-204)||(41596655-41596829)
chr7 (45-204)||(33532041-33532197)
chr7 (79-152)||(37126619-37126692)
chr7 (54-116)||(31294187-31294249)
chr7 (87-152)||(8363731-8363796)
[»] chr8 (3 HSPs)
chr8 (30-204)||(12868340-12868514)
chr8 (88-147)||(20098965-20099024)
chr8 (43-129)||(42809578-42809664)
[»] chr2 (5 HSPs)
chr2 (30-204)||(43525261-43525435)
chr2 (30-204)||(12055055-12055229)
chr2 (30-185)||(30397828-30397983)
chr2 (82-152)||(41318107-41318177)
chr2 (149-198)||(40355394-40355443)
[»] chr6 (3 HSPs)
chr6 (30-204)||(15667118-15667291)
chr6 (79-152)||(97245-97318)
chr6 (30-152)||(10895092-10895214)
[»] scaffold0129 (1 HSPs)
scaffold0129 (30-204)||(7565-7739)
[»] chr1 (3 HSPs)
chr1 (56-202)||(20256390-20256536)
chr1 (40-116)||(44316144-44316220)
chr1 (87-152)||(51065088-51065153)
[»] scaffold0711 (1 HSPs)
scaffold0711 (127-204)||(1-78)


Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 204 - 557
Target Start/End: Original strand, 39704171 - 39704522
Alignment:
Q  204 tcatgccgatcataattaaaacgatacaccactttcttaacatcgagtgcaaaatcaaccggtcctaagtcctaactgcaactcgtgtgtccaagtgaga 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39704171 tcatgccgatcataattaaaacgatacaccactttcttaacatcgagtgcaaaatcaaccggtcctaagtcctaactgcaactcgtgtgtccaagtgaga 39704270  T
Q  304 gagcatggaaaacacccaatggttctcctatattcacattacataaaggcgaaatccatttttgttttggtgagaacaaaacggtcttcctcatcgcgaa 403  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39704271 --gcatggaaaacacccaatggttctcctatattcacattacataaaggcgaaatccatttttgttttggtgagaacaaaacggtcttcctcatcgcgaa 39704368  T
Q  404 tgcaaataccaatcccaacatggttttgatgagtagaaagccatctctgttgactgttggtggtctgctccagcccgtgacagcttgctctggcatcaca 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  39704369 tgcaaataccaatcccaacatggttttgatgagtagaaagccatctctgttgactgttggttgtctgctccagcccgtgatagcttgctctggcatcaca 39704468  T
Q  504 gtagcttgttgagggagcatcaatttctcccgtctctaatttactcatcctttg 557  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  39704469 gtagcttgttgagggagcatcaatttcgcccttctctaatttactcatcctttg 39704522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 39702992 - 39703178
Alignment:
Q  18 atattgataaagttatcaagattaggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||    
T  39702992 atattgataaagttatcaagattaggttgagaaataagatgggaagtgagtttttaaatgatagcatgacggtttatatcgaaagggaaattagtgcaaa 39703091  T
Q  118 tattagttctgagttagttattgataatttaaagttagttggattgcataacgacttattttaattttcgaaggtatgtagtttact 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||    
T  39703092 tattagttctgagttagttattgataatttaaagttagttggatcgcataatgacttattttaattttctaaggtatgtagtttact 39703178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 22509788 - 22509614
Alignment:
Q  30 ttatcaagattaggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctga 129  Q
    ||||||||| |||||||||||| |||||||||||||||||| |||||  || |||||||||||||||||||||||| |||||||||| ||||||||||||    
T  22509788 ttatcaagactaggttgagaaacaagatgggaagtgggtttctaaatgataccatgacagtttatatcgaaagggatattagtgcaagtattagttctga 22509689  T
Q  130 gttagttattgataatttaaagttagttggattgcataacgacttattttaattttcgaaggtatgtagtttact 204  Q
    || |||||||||| |||| ||||||||||||| || ||||||||||||||||||||| |||||||||||||||||    
T  22509688 gtcagttattgatgatttcaagttagttggatcgcgtaacgacttattttaattttctaaggtatgtagtttact 22509614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 30 - 204
Target Start/End: Original strand, 39621954 - 39622128
Alignment:
Q  30 ttatcaagattaggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctga 129  Q
    ||||||||| |||||||||||| |||||||||||||||||| |||||  ||||||||| ||| |||||||||||||||||||||||| ||||||||||||    
T  39621954 ttatcaagactaggttgagaaacaagatgggaagtgggtttctaaatgatagcatgacggttaatatcgaaagggaaattagtgcaagtattagttctga 39622053  T
Q  130 gttagttattgataatttaaagttagttggattgcataacgacttattttaattttcgaaggtatgtagtttact 204  Q
     |||||||||||| |||| || |||||||||| |  ||||||||||||||||||||  |||||||||||||||||    
T  39622054 attagttattgatgatttcaaattagttggatcgtgtaacgacttattttaattttttaaggtatgtagtttact 39622128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 8425420 - 8425347
Alignment:
Q  79 tagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataatttaaagt 152  Q
    ||||||| |||||||||| ||||||||||||||||||  ||||||||| |||| | |||||||| |||| ||||    
T  8425420 tagcatgtcagtttatattgaaagggaaattagtgcatctattagttccgagtcaattattgatgatttcaagt 8425347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 19972117 - 19972052
Alignment:
Q  87 cagtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataatttaaagt 152  Q
    |||||||||| ||||||||||||||||||  ||||| ||| |||| | |||||||| |||| ||||    
T  19972117 cagtttatattgaaagggaaattagtgcatctattaattccgagtcaattattgatgatttcaagt 19972052  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 54788854 - 54788926
Alignment:
Q  82 catgacagtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataatttaaagtta 154  Q
    |||| ||| |||||| ||||| ||||||||||||  ||||||||| |||| | |||||||| |||| ||||||    
T  54788854 catgtcagattatattgaaagtgaaattagtgcatgtattagttccgagtcaattattgatgatttcaagtta 54788926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 6e-63; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 23121185 - 23121011
Alignment:
Q  30 ttatcaagattaggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctga 129  Q
    ||||||||| |||||||||||| |||||||||||||||||| |||||  || ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23121185 ttatcaagactaggttgagaaacaagatgggaagtgggtttctaaatgataccatgacagtttatatcgaaagggaaattagtgcaagtattagttctga 23121086  T
Q  130 gttagttattgataatttaaagttagttggattgcataacgacttattttaattttcgaaggtatgtagtttact 204  Q
    || |||||||||| |||| ||||||||||||| || ||||||||||||||||||||| |||||||||||||||||    
T  23121085 gtcagttattgatgatttcaagttagttggatcgcgtaacgacttattttaattttctaaggtatgtagtttact 23121011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 30 - 204
Target Start/End: Original strand, 14009505 - 14009679
Alignment:
Q  30 ttatcaagattaggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctga 129  Q
    ||||||||| |||||||||||| |||||||||||||||||| |||||  || |||||||||||||||| |||||||||||||||||| |||||||| |||    
T  14009505 ttatcaagactaggttgagaaacaagatgggaagtgggtttctaaatgataccatgacagtttatatcaaaagggaaattagtgcaagtattagttatga 14009604  T
Q  130 gttagttattgataatttaaagttagttggattgcataacgacttattttaattttcgaaggtatgtagtttact 204  Q
    || |||||||||| |||| ||||||||||||| || ||||||||||||||||||| | |||||||||||||||||    
T  14009605 gtcagttattgatgatttcaagttagttggatcgcgtaacgacttattttaatttcctaaggtatgtagtttact 14009679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 28313318 - 28313489
Alignment:
Q  30 ttatcaagattaggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctga 129  Q
    ||||||||| |||||||||||| |||||||||||||||||| |||||  ||||||||| |||||||| ||||| ||||||||||||| ||||||||||||    
T  28313318 ttatcaagactaggttgagaaacaagatgggaagtgggtttctaaatgatagcatgacggtttatattgaaagtgaaattagtgcaagtattagttctga 28313417  T
Q  130 gttagttattgataatttaaagttagttggattgcataacgacttattttaattttcgaaggtatgtagttt 201  Q
    ||||||||||||| |||| |||||| ||||||  | ||||||||||||||||||||| ||||||||||||||    
T  28313418 gttagttattgatgatttcaagttaattggatcacgtaacgacttattttaattttctaaggtatgtagttt 28313489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 15155239 - 15155158
Alignment:
Q  82 catgacagtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataatttaaagttagttggattg 163  Q
    |||||||||||||||| |||||||||||||||||| ||||  || | ||||||||| | || |||| ||||| |||||||||    
T  15155239 catgacagtttatatcaaaagggaaattagtgcaagtattgattataagttagttaataatgatttcaagttggttggattg 15155158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 19677040 - 19676980
Alignment:
Q  87 cagtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataattt 147  Q
    |||||||||| ||||||||||||||||||  ||||||||| |||| | |||||||| ||||    
T  19677040 cagtttatattgaaagggaaattagtgcatgtattagttccgagtcaattattgatgattt 19676980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 35635167 - 35635101
Alignment:
Q  88 agtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataatttaaagtta 154  Q
    |||||||||  |||||||||||||||||  |||||||||||||| | |||| ||| |||| ||||||    
T  35635167 agtttatattaaaagggaaattagtgcatgtattagttctgagtcaattatcgatgatttcaagtta 35635101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 38395228 - 38395162
Alignment:
Q  88 agtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataatttaaagtta 154  Q
    |||||||||  |||||||||||||||||  |||||||||||||| | |||| ||| |||| ||||||    
T  38395228 agtttatattaaaagggaaattagtgcatgtattagttctgagtcaattatcgatgatttcaagtta 38395162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 6e-63; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 42883820 - 42883634
Alignment:
Q  18 atattgataaagttatcaagattaggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaa 117  Q
    |||||||||||||||||||||  ||||||||| ||||||||| |||||||||| |||||  | ||| ||  |||||||||||||||||||||||||||||    
T  42883820 atattgataaagttatcaagaccaggttgagagataagatggaaagtgggtttctaaatgatggcacgatggtttatatcgaaagggaaattagtgcaaa 42883721  T
Q  118 tattagttctgagttagttattgataatttaaagttagttggattgcataacgacttattttaattttcgaaggtatgtagtttact 204  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||    
T  42883720 tattagttctgagttagttattgataatttcaagttagttggatcgcataacgacttattttaattttctaaagtatgtactttact 42883634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 30 - 204
Target Start/End: Original strand, 14461576 - 14461750
Alignment:
Q  30 ttatcaagattaggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctga 129  Q
    ||||||||| |||||||||||| |||||||||||||||||| |||||  || |||||||||||||||| || ||||||||| ||||| ||||||||||||    
T  14461576 ttatcaagactaggttgagaaacaagatgggaagtgggtttctaaatgataccatgacagtttatatcaaacgggaaattaatgcaagtattagttctga 14461675  T
Q  130 gttagttattgataatttaaagttagttggattgcataacgacttattttaattttcgaaggtatgtagtttact 204  Q
    || |||||||||| |||| ||||||||||||| || ||||||||||||||||||||| || |||| |||||||||    
T  14461676 gtcagttattgatgatttcaagttagttggatcgcgtaacgacttattttaattttctaaagtatatagtttact 14461750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 2664988 - 2664814
Alignment:
Q  30 ttatcaagattaggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctga 129  Q
    ||||||||| |||||||||||| |||||||||||||| ||| |||||  |||  |||| |||||||||||||| | ||||||| ||| |||||||| |||    
T  2664988 ttatcaagaataggttgagaaacaagatgggaagtggatttctaaatgatagtctgacggtttatatcgaaagtgtaattagtacaagtattagttatga 2664889  T
Q  130 gttagttattgataatttaaagttagttggattgcataacgacttattttaattttcgaaggtatgtagtttact 204  Q
    ||||||||||||| |||| ||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||    
T  2664888 gttagttattgatgatttcaagttagttggatcgcgtaacgacttatttaaattttctaaggtatgtagtttact 2664814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 9475092 - 9474981
Alignment:
Q  93 atatcgaaagggaaattagtgcaaatattagttctgagttagttattgataatttaaagttagttggattgcataacgacttattttaattttcgaaggt 192  Q
    |||| |||||||||||||||| || |||||||| ||| |||||||||||| |||| ||||||||||||| |   |||||||||||||||||||| |||||    
T  9475092 atattgaaagggaaattagtgaaagtattagttttgaattagttattgatgatttcaagttagttggatcgtgcaacgacttattttaattttctaaggt 9474993  T
Q  193 atgtagtttact 204  Q
     | |||||||||    
T  9474992 ttatagtttact 9474981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 55405017 - 55405090
Alignment:
Q  79 tagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataatttaaagt 152  Q
    ||||||| |||||||||| ||||||||||||||||||  ||||||||| |||| | |||||||| |||| ||||    
T  55405017 tagcatgtcagtttatattgaaagggaaattagtgcatctattagttccgagtcaattattgatgatttcaagt 55405090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 52648375 - 52648320
Alignment:
Q  149 aagttagttggattgcataacgacttattttaattttcgaaggtatgtagtttact 204  Q
    |||||||||||||| | |||| | |||||||||||||| |||||||||||||||||    
T  52648375 aagttagttggattacgtaaccaattattttaattttctaaggtatgtagtttact 52648320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 16401058 - 16401120
Alignment:
Q  90 tttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataatttaaagt 152  Q
    ||||||| ||||||||||||||||||  ||||||||| |||| | |||||||| |||| ||||    
T  16401058 tttatattgaaagggaaattagtgcatgtattagttccgagtcaattattgatgatttcaagt 16401120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 37058124 - 37058043
Alignment:
Q  82 catgacagtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataatttaaagttagttggattg 163  Q
    |||||||||||||||| ||||  |||||||||||| ||||  || | | ||||||| |||| |||| ||||| |||||||||    
T  37058124 catgacagtttatatcaaaagaaaaattagtgcaagtattgattataaattagttaatgatgatttcaagttggttggattg 37058043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 53816319 - 53816246
Alignment:
Q  79 tagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataatttaaagt 152  Q
    ||||||| || |||||| ||||||| |||||||||||  ||||||||| |||| | |||||||| |||| ||||    
T  53816319 tagcatgtcaatttataccgaaaggaaaattagtgcatgtattagttccgagtcaattattgatgatttcaagt 53816246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 43335509 - 43335457
Alignment:
Q  79 tagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctgagt 131  Q
    |||||||  ||||||||| ||||||||||||||||||  ||||||||| ||||    
T  43335509 tagcatgttagtttatattgaaagggaaattagtgcatgtattagttccgagt 43335457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 2e-60; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 30 - 204
Target Start/End: Original strand, 41596655 - 41596829
Alignment:
Q  30 ttatcaagattaggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctga 129  Q
    ||||||||| |||||||||||| |||||||||||||||||| |||||  || ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41596655 ttatcaagactaggttgagaaacaagatgggaagtgggtttctaaatgataccatgacagtttatatcgaaagggaaattagtgcaagtattagttctga 41596754  T
Q  130 gttagttattgataatttaaagttagttggattgcataacgacttattttaattttcgaaggtatgtagtttact 204  Q
    || |||||||||| |||| ||||||||||||| || ||||||||||||||||||| | |||||||||||||||||    
T  41596755 gtcagttattgatgatttcaagttagttggatcgcgtaacgacttattttaatttcctaaggtatgtagtttact 41596829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 45 - 204
Target Start/End: Original strand, 33532041 - 33532197
Alignment:
Q  45 tgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataa 144  Q
    ||||||| |||||||||||||||||| |||||  ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| || |    
T  33532041 tgagaaacaagatgggaagtgggtttctaaatgatagcatgacggtttatatcgaaagggaaattagtgcaagtattagttctgagttagttattaatta 33532140  T
Q  145 tttaaagttagttggattgcataacgacttattttaattttcgaaggtatgtagtttact 204  Q
    ||| ||||   ||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  33532141 tttcaagt---ttggattgcgtaacgacttattttaattttctaaggtatgtagtttact 33532197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 37126619 - 37126692
Alignment:
Q  79 tagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataatttaaagt 152  Q
    ||||||| |||||||||| ||||||||||||||||||  ||||||||| |||||| |||||||| |||| ||||    
T  37126619 tagcatgccagtttatattgaaagggaaattagtgcatctattagttccgagttaattattgatgatttcaagt 37126692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 31294187 - 31294249
Alignment:
Q  54 agatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaa 116  Q
    |||||| |||||||||| ||||   ||||| ||| ||||||||||||||||||||||||||||    
T  31294187 agatggaaagtgggtttctaaacaatagcacgacggtttatatcgaaagggaaattagtgcaa 31294249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 8363731 - 8363796
Alignment:
Q  87 cagtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataatttaaagt 152  Q
    |||||||||| |||||||||||||| |||  |||||||||||| | | |||||||| |||| ||||    
T  8363731 cagtttatattgaaagggaaattagcgcatgtattagttctgaatcaattattgatgatttcaagt 8363796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 4e-58; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 12868514 - 12868340
Alignment:
Q  30 ttatcaagattaggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctga 129  Q
    ||||||||| |||||||||||| |||||||||||||||||| |||||  || ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12868514 ttatcaagactaggttgagaaacaagatgggaagtgggtttctaaatgataccatgacagtttatatcgaaagggaaattagtgcaagtattagttctga 12868415  T
Q  130 gttagttattgataatttaaagttagttggattgcataacgacttattttaattttcgaaggtatgtagtttact 204  Q
    || |||||||||| |||| |||||||||||||  | ||||||||||||||||||| | |||||||||||||||||    
T  12868414 gtcagttattgatgatttcaagttagttggatcacgtaacgacttattttaatttcctaaggtatgtagtttact 12868340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 20098965 - 20099024
Alignment:
Q  88 agtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataattt 147  Q
    ||||||||| |||| |||||||||||||||||||||||| |||| | |||||||| ||||    
T  20098965 agtttatattgaaaaggaaattagtgcaaatattagttccgagtcaattattgatgattt 20099024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 42809578 - 42809664
Alignment:
Q  43 gttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctga 129  Q
    ||||||||| |||||||||  ||||||||||     ||||||| ||||||| ||||||||||| ||||||| |  ||||||||||||    
T  42809578 gttgagaaacaagatgggacatgggtttttagcaaatagcatgtcagtttacatcgaaagggatattagtgaatgtattagttctga 42809664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 4e-58; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 30 - 204
Target Start/End: Original strand, 43525261 - 43525435
Alignment:
Q  30 ttatcaagattaggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctga 129  Q
    ||||||||| |||||||||||| |||||||||||||||||| |||||  || |||||||||||||||||||||||||| |||||||| ||||||||||||    
T  43525261 ttatcaagactaggttgagaaacaagatgggaagtgggtttctaaatgataccatgacagtttatatcgaaagggaaactagtgcaagtattagttctga 43525360  T
Q  130 gttagttattgataatttaaagttagttggattgcataacgacttattttaattttcgaaggtatgtagtttact 204  Q
    || |||||||||| |||| ||||||||||||| || ||||||||||||||||||| | |||||||||||||||||    
T  43525361 gtcagttattgatgatttcaagttagttggatcgcgtaacgacttattttaatttcctaaggtatgtagtttact 43525435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 12055229 - 12055055
Alignment:
Q  30 ttatcaagattaggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctga 129  Q
    ||||||||| |||||||||||| || ||||||||||||||| |||||  ||||||||| |||||||| ||||||||||||||||||| |||||||| |||    
T  12055229 ttatcaagactaggttgagaaacaaaatgggaagtgggtttctaaatgatagcatgacggtttatattgaaagggaaattagtgcaagtattagttatga 12055130  T
Q  130 gttagttattgataatttaaagttagttggattgcataacgacttattttaattttcgaaggtatgtagtttact 204  Q
    ||| || |||||| |||| ||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||    
T  12055129 gttggtcattgatgatttcaagttagttggatcgcataacgaattattttaattttctaaggtatgtagtttact 12055055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 30397828 - 30397983
Alignment:
Q  30 ttatcaagattaggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctga 129  Q
    |||| |||| ||| ||||||||||||||||||| || |||| |||||| |||||| |||||||||||||||| |||||||||||||| ||| ||||||||    
T  30397828 ttatgaagactagattgagaaataagatgggaaatgagtttctaaattatagcataacagtttatatcgaaaaggaaattagtgcaagtatcagttctga 30397927  T
Q  130 gttagttattgataatttaaagttagttggattgcataacgacttattttaatttt 185  Q
    ||| ||||||| |||||| ||||||||||||| |||||| || |||||||||||||    
T  30397928 gttggttattgttaattttaagttagttggatcgcataaagaattattttaatttt 30397983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 41318107 - 41318177
Alignment:
Q  82 catgacagtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataatttaaagt 152  Q
    |||| ||| |||||| |||||||||||||||||| |||||| ||| |||| | |||||||| |||| ||||    
T  41318107 catgtcaggttatattgaaagggaaattagtgcacatattacttccgagtcaattattgatgatttcaagt 41318177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 40355443 - 40355394
Alignment:
Q  149 aagttagttggattgcataacgacttattttaattttcgaaggtatgtag 198  Q
    ||||||||||||| || ||| || |||||||||||||| |||||||||||    
T  40355443 aagttagttggatcgcgtaatgatttattttaattttctaaggtatgtag 40355394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 9e-56; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 15667291 - 15667118
Alignment:
Q  30 ttatcaagattaggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctga 129  Q
    ||||||||| |||||||||||| |||||||||||||||||| |||||  ||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  15667291 ttatcaagactaggttgagaaacaagatgggaagtgggtttctaaatgatagcatgacggtttatatcgaaagggaaattagtgcaagtattagttctga 15667192  T
Q  130 gttagttattgataatttaaagttagttggattgcataacgacttattttaattttcgaaggtatgtagtttact 204  Q
    |||| |||||||| |||| ||||||||||||| ||||||  |||||||||||||||  |||||||||||||||||    
T  15667191 gtta-ttattgatgatttcaagttagttggatcgcataaaaacttattttaattttttaaggtatgtagtttact 15667118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 97245 - 97318
Alignment:
Q  79 tagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataatttaaagt 152  Q
    ||||||| |||||||||| ||||||||||||||||||  ||||||||| |||| | |||||||| |||| ||||    
T  97245 tagcatgtcagtttatattgaaagggaaattagtgcatctattagttccgagtcaattattgatgatttcaagt 97318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 10895214 - 10895092
Alignment:
Q  30 ttatcaagattaggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctga 129  Q
    ||||||||  || ||||||||| |||||||||  ||||||||||     ||| ||| |||||||||| ||||||||||||||||||  ||||| ||| ||    
T  10895214 ttatcaagtctaagttgagaaacaagatgggacttgggtttttagcagttagtatgtcagtttatattgaaagggaaattagtgcatctattaattccga 10895115  T
Q  130 gttagttattgataatttaaagt 152  Q
    || | |||||||| |||| ||||    
T  10895114 gtcaattattgatgatttcaagt 10895092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 7739 - 7565
Alignment:
Q  30 ttatcaagattaggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctga 129  Q
    |||| |||| |||||||||||| ||||| |||||||||||| |||||  ||||||||| ||||||||||||||| |||||||||||| |||||||| |||    
T  7739 ttatgaagactaggttgagaaacaagattggaagtgggtttctaaatgatagcatgacggtttatatcgaaaggaaaattagtgcaagtattagttatga 7640  T
Q  130 gttagttattgataatttaaagttagttggattgcataacgacttattttaattttcgaaggtatgtagtttact 204  Q
    ||||||||||||| |||  || |||||||||| |  ||||||||||||||||||||| | |||||||||||||||    
T  7639 gttagttattgatgattacaacttagttggatcgtgtaacgacttattttaattttctatggtatgtagtttact 7565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 5e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 56 - 202
Target Start/End: Complemental strand, 20256536 - 20256390
Alignment:
Q  56 atgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataatttaaagttag 155  Q
    |||||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||| |||||||    
T  20256536 atgggaagtgagtttttaaatgatagcatgacggtttatatcgaaagggaaattagtgcaagtattagttttgagttagttattgatgattttaagttag 20256437  T
Q  156 ttggattgcataacgacttattttaattttcgaaggtatgtagttta 202  Q
    || ||| || |||  | |||||||||||||  |||||||||||||||    
T  20256436 ttagatcgcgtaaataattattttaattttttaaggtatgtagttta 20256390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 44316220 - 44316144
Alignment:
Q  40 taggttgagaaataagatgggaagtgggtttttaaattgtagcatgacagtttatatcgaaagggaaattagtgcaa 116  Q
    |||||||||||| |||||||||||||||||| |||||  || |||||| || ||||| ||||||| |||||||||||    
T  44316220 taggttgagaaacaagatgggaagtgggtttctaaatgataacatgaccgtatatattgaaaggggaattagtgcaa 44316144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 51065153 - 51065088
Alignment:
Q  87 cagtttatatcgaaagggaaattagtgcaaatattagttctgagttagttattgataatttaaagt 152  Q
    |||||||||| ||||||||||||||||||  ||||||||| |||| | |||||||| |||| ||||    
T  51065153 cagtttatattgaaagggaaattagtgcatgtattagttccgagtcaattattgatgattttaagt 51065088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 1 - 78
Alignment:
Q  127 tgagttagttattgataatttaaagttagttggattgcataacgacttattttaattttcgaaggtatgtagtttact 204  Q
    ||||| |||||||||| |||| ||||||||||||| || ||||||||||||||||||| | |||||||||||||||||    
T  1 tgagtcagttattgatgatttcaagttagttggatcgcgtaacgacttattttaatttcctaaggtatgtagtttact 78  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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