View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_low_21 (Length: 313)
Name: NF19453_low_21
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 43062342 - 43062205
Alignment:
| Q |
3 |
gaatcagtgacaaaaaacattggaaatcggaactagattttatgaaaaaacagatcaacatatcaaagcaatatggaaggttgcatgactcctatgatct |
102 |
Q |
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| T |
43062342 |
gaatcagtgacaaaaaacattggaaatcggaactagattttatgaaaaaacagatcaacatatcaaagcaatatggaaggttgcatgactcctatgatct |
43062243 |
T |
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| Q |
103 |
tttgggagctctgataccagtgtgttactacgtatttc |
140 |
Q |
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| T |
43062242 |
tttgggagctctgataccagtgtgttgctacgtatttc |
43062205 |
T |
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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 43061937 - 43061871
Alignment:
| Q |
232 |
tgctctctcaagtcagctcgtgaatgagatcgaaatctaatgaattcacatcaaacaaccaaagaag |
298 |
Q |
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| T |
43061937 |
tgctctctcaagtcagctcgtgaatgagatcgaaatcaaatgaattcacatcaaacaaccaaagaag |
43061871 |
T |
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