View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_low_25 (Length: 295)
Name: NF19453_low_25
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 52178542 - 52178364
Alignment:
| Q |
26 |
aagtgggtgtaaattagaaaacaatttttaggttttatgtgaataaattttaaatagactaataaataaggtcttcaacatcataacacacgccatattg |
125 |
Q |
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| T |
52178542 |
aagtgggtgtaaattagaaaacaatttttaggttttatgtgaataaattttaaatagactaataaataaggtcttcaacatcataacacacgccatattg |
52178443 |
T |
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| Q |
126 |
cttaataaagctcgtgaatcatgatgcataaaacgtctagaatgattttttgtgtgtgacaaaagtcaagaaatttttg |
204 |
Q |
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| T |
52178442 |
cttaataaagctcgtgaatcatgatgcataaaacgtctagaatgattttttgtgtgtgacaaaagtcaagaaatgtttg |
52178364 |
T |
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Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 52178384 - 52178307
Alignment:
| Q |
210 |
acaaaagtcaagaaatgtttgttgagtttaatgtacaaagcttttgcttggcaaagtctacttcaactgctgtctgtg |
287 |
Q |
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| T |
52178384 |
acaaaagtcaagaaatgtttgttgagtttaatgtacaaagcttttgcttggcaaagtctacttcaactgctgtctgtg |
52178307 |
T |
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