View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_low_28 (Length: 269)
Name: NF19453_low_28
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 45731232 - 45731484
Alignment:
| Q |
1 |
caaggtcatgtaaaatgagactctcaagagttcacatgtcttaactcaacaggtaaaatgtcgaagttgttaagttagacgtcatgaacgatgttcgaat |
100 |
Q |
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| T |
45731232 |
caaggtcatgtaaaatgagactctt--gagtccacatatcttaactcaataggtaaaatgtcgaaattgttaggttagacgtcatgaacgaggtttgaat |
45731329 |
T |
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| Q |
101 |
cctgactcatctacttatgtgtgcgagtttacaatggctattatcatttcgtctacctacaaatnnnnnnntatgaggccctaaagaagactatgcgcaa |
200 |
Q |
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| T |
45731330 |
cctgactcatctacttatgtgtgcgagtttacaatgactattgtcatttcgtctacctacaaataaaaaaatatgaggccctaaagaagactatgcgtag |
45731429 |
T |
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| Q |
201 |
ggaccaaacaacaatatgtaccttcccaatcaaatagatttccttatgatataac |
255 |
Q |
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| T |
45731430 |
ggaccaaacaacaatatgtaccttcccaatcaaatagatttccttatgatataac |
45731484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 45736753 - 45736828
Alignment:
| Q |
180 |
cctaaagaagactatgcgcaaggaccaaacaacaatatgtaccttcccaatcaaatagatttccttatgatataac |
255 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45736753 |
cctaaagaagactatgcgcgggaaccaaacaacaatatgtacctcgccaatcaaatagatttccttatgatataac |
45736828 |
T |
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