View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_low_3 (Length: 529)
Name: NF19453_low_3
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 187 - 513
Target Start/End: Complemental strand, 9686972 - 9686648
Alignment:
| Q |
187 |
agaaattgtaattaagaggatttataattttccatgcccaaatagtaattgagaggggtttccaannnnnnnnnctatgcataaattgtaatcgagagag |
286 |
Q |
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| T |
9686972 |
agaaattgtaatgaagaggatttgtaattttccatgcacaaatagtaattgagaggggtttgcaatttttttttccgtgcataaattgtaattgagag-- |
9686875 |
T |
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| Q |
287 |
tttgcaattttgtctttgtaagaattgtaattgtatttaagtccgagagagtatgcgatcattaagacaacacaagttctcttttttacagtcgaatatc |
386 |
Q |
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| T |
9686874 |
tttgcaattttgtctttgtaaaaattgtaattgtgtttaagtctgagagagtatgtgatcgttaagacaacataagttctcttttttacagtcgaatatc |
9686775 |
T |
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| Q |
387 |
ttgtcttttaactaaagataatatttctatcaacttataaggaattctcacacagttttaacactcactcttttattatataaaattaaagtggatttca |
486 |
Q |
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| T |
9686774 |
ttgtcttttaattaaagataatatttctatcaacttataaggaattctcacacatttttaacactcacttttttattatataaaattaaagtggatttca |
9686675 |
T |
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| Q |
487 |
cattttagttattgatcacacataaaa |
513 |
Q |
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| T |
9686674 |
cattttagttattgatcacacataaaa |
9686648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 9687597 - 9687408
Alignment:
| Q |
15 |
aaaagagaggtagagtgttgttataaatatgaagagttagtttaattttctttaccacaacaactctagtcctttgggtatattagggcttgaatagttg |
114 |
Q |
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| T |
9687597 |
aaaagagaggtagagtgttgttataaatatgaagagttagtttaattttctttaccacaacagctctagtcttttgggtatattagggcttgaatagttg |
9687498 |
T |
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| Q |
115 |
cgtgtctcaagaggatttgcaattttccatgcaaagatagtaattgagagggtttgcaattttttcccatgcagaaattgtaattaagag |
204 |
Q |
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| T |
9687497 |
tgtgtcttgagagggtttgcaattttccatgcaaagatattaattgagagggtttgcaattttttcccatgcagaaattgtaattaagag |
9687408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 9686959 - 9686902
Alignment:
| Q |
123 |
aagaggatttgcaattttccatgcaaagatagtaattgaga-gggtttgcaatttttt |
179 |
Q |
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| T |
9686959 |
aagaggatttgtaattttccatgcacaaatagtaattgagaggggtttgcaatttttt |
9686902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 8161333 - 8161384
Alignment:
| Q |
35 |
ttataaatatgaagagttagttt-aattttctttaccacaacaactctagtc |
85 |
Q |
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| T |
8161333 |
ttataaatatgaagagttaatttgaattttctttaccacaactactttagtc |
8161384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 3511686 - 3511646
Alignment:
| Q |
280 |
gagagagtttgcaattttgtctttgtaagaattgtaattgt |
320 |
Q |
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| T |
3511686 |
gagagagtttgcaattttgtcattgtaaaaattgcaattgt |
3511646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 3511741 - 3511669
Alignment:
| Q |
68 |
accacaacaactctagtcctttgggtatattagggcttgaatagttgcgtgtctcaagaggatttgcaatttt |
140 |
Q |
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| T |
3511741 |
accacaacaactctagtcttttgggtgtattggggattgggtagttgtgtgtcttgagagagtttgcaatttt |
3511669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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