View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_low_30 (Length: 257)
Name: NF19453_low_30
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 5815857 - 5816094
Alignment:
| Q |
1 |
tttaaattgggagtaaagtaaacatatgcaataaagtgaatggaaaggaaaacatggatcaaactagcata-ttggttccttcataactctacaaaatag |
99 |
Q |
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| T |
5815857 |
tttaaattgggagtaaagtaaacatatgcaataaagtgaatggaaaggaaaacatggatcaaactagcataattggttccttcataactctacaaaatag |
5815956 |
T |
|
| Q |
100 |
agtagtctacatgagacataaaaataaggtaaatcaatgtttactatactcagccaatagaatgccactgttgggacactcctgcaatgactttgccatc |
199 |
Q |
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| T |
5815957 |
agtagtctacatgagacataaaaataaggtaaatcaatgtttactatactcagccaatagaatgccactgttgggacactcctgcaatgactttgccatc |
5816056 |
T |
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| Q |
200 |
aaataatcagcttctttcttaaatccattccttaattc |
237 |
Q |
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| T |
5816057 |
aaataatcagcttctttcttacatccatgccttaattc |
5816094 |
T |
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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 25164431 - 25164520
Alignment:
| Q |
150 |
cagccaatagaatgccactgttgggacactcctgcaatgactttgccatcaaataatcagcttctttcttaaatccattccttaattctg |
239 |
Q |
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| T |
25164431 |
cagcccatagaatgccactgttgggacactcctgcaatgcttttgccatcaaaatatcagcttctttcttataaccatgctttaattctg |
25164520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 25163839 - 25163891
Alignment:
| Q |
42 |
ggaaaggaaaacatggatcaaactagcatattggttccttcataactctacaa |
94 |
Q |
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| T |
25163839 |
ggaaaggagaacatggatcaaactagcatacaagttccatcataactccacaa |
25163891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 2188818 - 2188901
Alignment:
| Q |
156 |
atagaatgccactgttgggacactcctgcaatgactttgccatcaaataatcagcttctttcttaaatccattccttaattctg |
239 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||| | ||||||||| |
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| T |
2188818 |
atagaattccactgttgggacactcctgcaatgcttttgccatcaacgtatcagcttctttcttgtatccatgctttaattctg |
2188901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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