View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_low_39 (Length: 231)
Name: NF19453_low_39
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 5314025 - 5313875
Alignment:
| Q |
9 |
acatcactacctttcaagttgtacaagtggaattggtaatatctctaatctatgcacgtaatttttgtgttattagttgaa----tatacacacattaac |
104 |
Q |
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| T |
5314025 |
acattactacctttcaagttgtacaagtggaattggtaatatctctaatctatgtacgtaatttttgtgttattagttgaatatatatacacacgttaac |
5313926 |
T |
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| Q |
105 |
tgagtttttattttccaaaacaggtggatatcaataacacatcctaatcgc |
155 |
Q |
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| T |
5313925 |
tgagtttttattttccaaaacaggcggatatcaataacacatcctaatcgc |
5313875 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 1072857 - 1072813
Alignment:
| Q |
183 |
tatataactcaagtttagttcattatgttagcaaacttagttttc |
227 |
Q |
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| T |
1072857 |
tatataactcaagttcagttcattatattaacaaacttaattttc |
1072813 |
T |
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