View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_low_4 (Length: 506)
Name: NF19453_low_4
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 111 - 417
Target Start/End: Complemental strand, 26843178 - 26842872
Alignment:
| Q |
111 |
aaaaggtataacaaaaaacatgtcaaaatcaataagttgaaagtatatatgtatcgtagagaatctcatctaacataacttgagcaaattttttaacatc |
210 |
Q |
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| T |
26843178 |
aaaagttataacaaaaaacatgtcaaaatcaataagttgaaagtatatatgtatcgtagagaatctcatctaacataacttgagcaaattttttaacatc |
26843079 |
T |
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| Q |
211 |
tagatcaggtattttgatctacttgtattcagacatacatatatatgcttctccaaatctgccgtatagaaacatacaagagtatttggcaagaacatgc |
310 |
Q |
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| T |
26843078 |
tagaacaggtattttgatctacttttattcagacatacatatatatgcttcttcaaatctgccgtatagaaacaaataagagtatttggcaagaacatgc |
26842979 |
T |
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| Q |
311 |
acccaattagtgacagtaaattgttctacaaataaaataagtgctttcagaatagtagttcaagggcgtatatatgatacattcaatacataaacatgta |
410 |
Q |
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| T |
26842978 |
acccaattagtgacagtaaattgttctacaaataaaataagtgctttcagaatagtagttcaagggcgtatatatgatactttcaatacataaacatata |
26842879 |
T |
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| Q |
411 |
catgtaa |
417 |
Q |
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||||||| |
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| T |
26842878 |
catgtaa |
26842872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 409 - 494
Target Start/End: Complemental strand, 26842697 - 26842612
Alignment:
| Q |
409 |
tacatgtaaataatccactcatgcatataagagatttagttcaatttgcactatatagtcactttagggactatatgaaaatattg |
494 |
Q |
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| T |
26842697 |
tacatgtaagtaatccactcatgcatataagagatttagttcaatttgcactatatagtcactttagggactatgtgaaaatattg |
26842612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 26843381 - 26843324
Alignment:
| Q |
56 |
ccgaagcatggtttgcggatcaagaaatcagccaaaaaatatagaatctggtcctaaa |
113 |
Q |
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| T |
26843381 |
ccgaagcatggtttgcggatcaagaaatcagccaaaaaatatagaatccggtcctaaa |
26843324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 8180910 - 8180969
Alignment:
| Q |
54 |
atccgaagcatggtttgcggatcaagaaatcagccaaaaaatatagaatctggtcctaaa |
113 |
Q |
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| T |
8180910 |
atccgaagcatggtctgcagatcaagaaatcagccagaaaatatagaatccggtcctaaa |
8180969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 27536958 - 27536992
Alignment:
| Q |
15 |
tatggacttaatttgaagtggggaccggaacctga |
49 |
Q |
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| T |
27536958 |
tatggacttaatttgaagtggggacaggaacctga |
27536992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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