View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_low_41 (Length: 221)
Name: NF19453_low_41
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 8070033 - 8070221
Alignment:
| Q |
17 |
agtaaggtcatgtctgttgaaattgaggatgttcatgatgccgaggagttgaaagctgttgaagagttccgtcaagctcttatatcggaagacctcctcc |
116 |
Q |
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| T |
8070033 |
agtaaggtcatgtctgttgaaattgaggatgttcatgatgccgaggagttgaaagctgttgaagagttccgtcaagctcttatatcggaagacctcctcc |
8070132 |
T |
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| Q |
117 |
ccgagaaacatgatgactatcatatgatgcttaggttactctctcttcttgtgtttttagtctatcttactattttcaatgaagcctttgct |
208 |
Q |
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| T |
8070133 |
ctgagaaacatgatgactatcatatgatgcttaggttactctc---tcttgtgtttttagtctatcatactattttcaatgaagcctttgct |
8070221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 32618271 - 32618136
Alignment:
| Q |
17 |
agtaaggtcatgtctgttgaaattgaggatgttcatgatgccgaggagttgaaagctgttgaagagttccgtcaagctcttatatcggaagacctcctcc |
116 |
Q |
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|||||||| ||||| |||||||| |||||| ||| || || || || |||||||| ||||| || |||||||| |||||||||| ||| || | || | |
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| T |
32618271 |
agtaaggttatgtcagttgaaatcgaggatattcgcgacgctgatgatttgaaagccgttgatgaattccgtcaggctcttatattggatgaattgcttc |
32618172 |
T |
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| Q |
117 |
ccgagaaacatgatgactatcatatgatgcttaggt |
152 |
Q |
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| T |
32618171 |
ctgagaagcatgatgactatcatatgctgctcaggt |
32618136 |
T |
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