View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19453_low_8 (Length: 431)
Name: NF19453_low_8
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 413
Target Start/End: Original strand, 47072109 - 47072506
Alignment:
| Q |
15 |
gagatgaacagatgaaggtggtagaagtagaattatttgtaactgataccctattatgaatatgaagcattggattcttactttcaataattaatggtac |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47072109 |
gagaagaacagatgaaggtggtagaagtagaattatttgtaactgataccctattatgaatatgaagcaatggattcttactttcaataattaatggtac |
47072208 |
T |
|
| Q |
115 |
tgggtacatcaattatatacattttggaagaaaggaagatgaactggaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaataga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47072209 |
tgggtacatcaattatatacattttggaagaaaggaagatcaacttgaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaataga |
47072308 |
T |
|
| Q |
215 |
aagagcataaactactactatctaactttcataatcaagatgctacatatggcagagattcatgcttcaatttacagttcatttgaatgnnnnnnntgca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
47072309 |
aagagcataaactactactatctaactttcataatcaagatgctacatatggcagagattcatgcttcaatttacagttcatttgaatgaaaaaac-gca |
47072407 |
T |
|
| Q |
315 |
tttgcgacctaaaatttcgtccgcatccaacacaaataaaatgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttg |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
47072408 |
tttgcgacctaaaatttcgtccgcatccaacacaaataaaatgtaccacttaatatctaaggattgttgatcaagtatctatacagagaagaacggttg |
47072506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 56 - 413
Target Start/End: Original strand, 33598227 - 33598582
Alignment:
| Q |
56 |
actgataccctattatgaatatgaagcattggattcttactttcaataattaatggtactgggtacatcaattatatacattttggaagaaaggaagatg |
155 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33598227 |
actgataccctattatgaatatgaagcaacgctttcttactttcaataatgaatggtactgggtacatcaattatatacattttggaagaaaggaagatc |
33598326 |
T |
|
| Q |
156 |
aactggaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatagaaagagcataaactactactatctaactttcataatcaagat |
255 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33598327 |
aacttgaaactgaatcaaataacacaatgtaaactaaaagttaattaacatgaaatagaaagggcataaactactactatctaactttcataatcaagat |
33598426 |
T |
|
| Q |
256 |
gctacatatggcagagattcatgcttcaatttacagttcatttgaatgnnnnnnntgcatttgcgacctaaaatttcgtccgcatccaacacaaataaaa |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33598427 |
gctacatatggcagagattcatgcttcaatctacagttcatttgaatgaaaaacgt--atttgagacctaaaatttcgtccgcatccaacacaaataaaa |
33598524 |
T |
|
| Q |
356 |
tgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33598525 |
tgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttg |
33598582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 162 - 303
Target Start/End: Complemental strand, 18232908 - 18232771
Alignment:
| Q |
162 |
aaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatagaaagagcataaactactactatctaactttcataatcaagatgctaca |
261 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| || |||||||||| | |
|
|
| T |
18232908 |
aaactgaatcaagtaacacaatgtaaactagaagctaacaaacatgaaatagaaatagcataaactactactatctaacatttataatcaaga------a |
18232815 |
T |
|
| Q |
262 |
tatggcagagattcatgcttcaattt--acagttcatttgaatg |
303 |
Q |
| |
|
||| ||||||||||||| ||| |||| |||||||||||||||| |
|
|
| T |
18232814 |
tatagcagagattcatgtttctatttacacagttcatttgaatg |
18232771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 18232721 - 18232660
Alignment:
| Q |
352 |
aaaatgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttg |
413 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||| |||||| |||||||| |
|
|
| T |
18232721 |
aaaatgtaccacttaaaatctaaggattgtggatcaactatctatagagagaaaaaaggttg |
18232660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University