View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_low_9 (Length: 425)
Name: NF19453_low_9
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_low_9 |
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| [»] scaffold1149 (2 HSPs) |
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Alignment Details
Target: scaffold1149 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: scaffold1149
Description:
Target: scaffold1149; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 215 - 407
Target Start/End: Complemental strand, 942 - 750
Alignment:
| Q |
215 |
cattatagcggatgttattaattgtacccaagattctgattgtcagtcaattggatgcttgtctcatcttaaaccgaagtgtactatgttaggannnnnn |
314 |
Q |
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| T |
942 |
cattatagcggatgttattaattgtacccaagattctgattgtcattcaattggatgcttgtctcatcttaaaccgaagtgtactatgttaggatttttt |
843 |
T |
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| Q |
315 |
nncaatgccttagttggtatatgtgaatgtgatcaagtgatgtgaccataagatatttctggaaaagtataggatatctcattttgttattgt |
407 |
Q |
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| T |
842 |
ttcaatgcctttgttggcatatgtgaatgtgatcaagtgatgtgaccataagatatttctagaaaagtaaaggacatctcattttgttattgt |
750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1149; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 1156 - 1026
Alignment:
| Q |
1 |
taaagtgataaaactatataatatttcttacatgcataagaaagaaattatggctaaagttctcaaacttgttaatgttatgatcatctttcttgcccta |
100 |
Q |
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| T |
1156 |
taaagtgataaaactatataatatttcttacatgcataagaaataaattatggctaaagttctcaaacttgttaatgttatgatcatctttcttgcccta |
1057 |
T |
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| Q |
101 |
attcttgttgcaatgaacgttaatggtaatc |
131 |
Q |
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| T |
1056 |
gttcttgttgcaatgaacgttaatggtaatc |
1026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 215 - 407
Target Start/End: Original strand, 16235816 - 16236008
Alignment:
| Q |
215 |
cattatagcggatgttattaattgtacccaagattctgattgtcagtcaattggatgcttgtctcatcttaaaccgaagtgtactatgttaggannnnnn |
314 |
Q |
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| T |
16235816 |
cattatagcggatgttattaattgtacccaagattctgattgtcagtcaattggatgcttgtctcatcttaaaccgaagtgtactatgttaggatttttt |
16235915 |
T |
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| Q |
315 |
nncaatgccttagttggtatatgtgaatgtgatcaagtgatgtgaccataagatatttctggaaaagtataggatatctcattttgttattgt |
407 |
Q |
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| T |
16235916 |
ttcaatgcctttgttggcatatgcgaatgtgatcaagtgatgtgaccataagatttttctagaaaactataggatatctcattttgttattgt |
16236008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 16235602 - 16235732
Alignment:
| Q |
1 |
taaagtgataaaactatataatatttcttacatgcataagaaagaaattatggctaaagttctcaaacttgttaatgttatgatcatctttcttgcccta |
100 |
Q |
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| T |
16235602 |
taaagtgataaaactatataatatttcttacatgcataagaaataaattatggctaaagttctcaaacttgttaatgttatgatcatttttcttgcccta |
16235701 |
T |
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| Q |
101 |
attcttgttgcaatgaacgttaatggtaatc |
131 |
Q |
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| T |
16235702 |
gttcttgttgcaatgaacgttaacggtaatc |
16235732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 16032198 - 16032110
Alignment:
| Q |
43 |
agaaattatggctaaagttctcaaacttgttaatgttatgatcatctttcttgccctaattcttgttgcaatgaacgttaatggtaatc |
131 |
Q |
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| T |
16032198 |
agaaactatggttaaaattctcaagtttatttatgttatgattatctttctttcactatttcttgttgcaacaaacgttaatggtaatc |
16032110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 19198182 - 19198236
Alignment:
| Q |
1 |
taaagtgataaaactatataatatttcttacatgcataagaaagaaattatggct |
55 |
Q |
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| T |
19198182 |
taaagtgataaaaccatattctatttcttacatgcatatggaagaaagtatggct |
19198236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 12731537 - 12731460
Alignment:
| Q |
44 |
gaaattatggctaaagttctcaaacttgttaatgttatgatcatctttcttgccctaattcttgttgcaatgaacgtt |
121 |
Q |
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| T |
12731537 |
gaaaatatggctgaagttattaaatttgttaatgttataattatctttatttccctatttccttttgcaatgaacgtt |
12731460 |
T |
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