View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19454_high_10 (Length: 256)
Name: NF19454_high_10
Description: NF19454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19454_high_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 39747452 - 39747691
Alignment:
| Q |
17 |
cattacattactccccctctattatcatgcctcctatattatagttgtgttggttttcttcttctacaaaactgtaaaaagagtcgttgaggccagatta |
116 |
Q |
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| T |
39747452 |
cattacattactccccctctattatcatgcctcctatattatagttgtgttggttttcttcttctacaaaactgtaaaaagagtcgtcgaggccaaatta |
39747551 |
T |
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| Q |
117 |
tccactcttggtggctttgacaaattctgacattcctagactctgtgagctgaaaaatatttgattatccttactttgactaatgactcgttcgactatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39747552 |
tccactcttggtggctttgacaaattctgacattcctagactctgtgagctgaaaaatattttattatccttactttgactaatgactcgttcgactatc |
39747651 |
T |
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| Q |
217 |
tatacatcaactcacccttaatttagtcttaggttgtttt |
256 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |
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| T |
39747652 |
tatacatcaactcacccttaatttagtctaaggttgtttt |
39747691 |
T |
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