View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19454_high_9 (Length: 261)
Name: NF19454_high_9
Description: NF19454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19454_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 39747742 - 39747988
Alignment:
| Q |
1 |
gttatgtttgttggtcttaaatctgaatatttaggtatttccacatattaatattaattaaagactaatttaatgcatgacatcaacaatgtgaagattt |
100 |
Q |
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| T |
39747742 |
gttatgtttgttggtcttaaatctgaatatttaggtatttccacatattaatattaattaaagactaatttaatgcatgacatcaacaatgtaaagattt |
39747841 |
T |
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| Q |
101 |
tgatttatgtgtgaaacaattttttatcagacttcaattacctctcgactaaactttagattatcatatctctttcccctaaaaacaagggattgtaaaa |
200 |
Q |
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| T |
39747842 |
tgatttatgtgttaaacaattttttattagacttcacttacctctcgactaaactttagattatcatatctcattcccctgaaaataagggattgttaaa |
39747941 |
T |
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| Q |
201 |
atagtacaannnnnnnngtttacaatttcaattgaatcttcttaatat |
248 |
Q |
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| T |
39747942 |
atagtacaatttttttt-tttacaatttcaattgaatcttcttaatat |
39747988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 41932045 - 41932077
Alignment:
| Q |
99 |
tttgatttatgtgtgaaacaattttttatcaga |
131 |
Q |
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| T |
41932045 |
tttgatttatgagtgaaacaattttttatcaga |
41932077 |
T |
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