View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19454_low_1 (Length: 471)

Name: NF19454_low_1
Description: NF19454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19454_low_1
NF19454_low_1
[»] chr7 (3 HSPs)
chr7 (1-459)||(43200175-43200652)
chr7 (235-294)||(39104097-39104155)
chr7 (236-276)||(10484333-10484373)
[»] chr4 (2 HSPs)
chr4 (236-286)||(40745249-40745299)
chr4 (246-285)||(36066501-36066540)
[»] chr6 (2 HSPs)
chr6 (235-286)||(14609063-14609114)
chr6 (236-276)||(14580118-14580158)
[»] chr5 (1 HSPs)
chr5 (252-287)||(36576394-36576429)
[»] chr3 (1 HSPs)
chr3 (252-285)||(41872426-41872459)
[»] chr1 (1 HSPs)
chr1 (233-286)||(49275486-49275539)


Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 43200175 - 43200652
Alignment:
Q  1 tgtttcatccactttaaacctcttgttgtggatgcagaatatgcatgtgttggataaccaaataaagcatataagaattctttacatacatattacaaa- 99  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||     
T  43200175 tgtttcatccactttaaacctcttgttttggatgcagaatatgcatgtgttggataaccaaatatagcatataagaattctttgcatacatattacaaaa 43200274  T
Q  100 tatcatttcgtttgttcactaaaatgtcgatagaagggtttattttatnnnnnnnttagggtaaaacagcgta----gcataaaaaattgtagaattcct 195  Q
    | |||| |||||||||||||||||||  ||||||||||||||||| ||       ||||||||||||||| ||    ||||||||||| || ||||||||    
T  43200275 tgtcatgtcgtttgttcactaaaatgcggatagaagggtttatttcataagaaaattagggtaaaacagcatacaatgcataaaaaatagtggaattcct 43200374  T
Q  196 tcacaaattagtctaaggataaggttactacaatcatcactttaggtctcccaacaaaaaattatttttcattatattttataaacaaaaattcctcatt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43200375 tcacaaattagtctaaggataaggttactacaatcatcactttaggtctcccaacaaaaaattatttttcattatattttataaacaaaaattcctcatt 43200474  T
Q  296 tacggactnnnnnnntctcatatattaaaatttgttttaaatctcatatattaggccaaccctattccagacccctacatgcacaccaaac--------- 386  Q
    ||||||||       |||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||             
T  43200475 tacggactaaaaaaatctcatatattaaaatttattttaaatctcgtatattaggccaatcctattccagacccctacatgcacaccaaactgccttttt 43200574  T
Q  387 -----tgccgttttcatttactttgaagaacgaggttgagcatcttttaattttgaagatacttctgattatgcgcat 459  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43200575 taaattgccgttttcatttactttgaagaacgaggttgagcatcttttaattttgaagatacttctgattatgcgcat 43200652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 39104155 - 39104097
Alignment:
Q  235 ctttaggtctcccaacaaaaaattatttttcattatattttataaacaaaaattcctcat 294  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  39104155 ctttaggcctaccaacaaaaaat-atttttcattatattttataaacaaaaatgcctcat 39104097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 10484373 - 10484333
Alignment:
Q  236 tttaggtctcccaacaaaaaattatttttcattatatttta 276  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  10484373 tttaggcctcccaacaaaaaattatttttcattatatttta 10484333  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 40745249 - 40745299
Alignment:
Q  236 tttaggtctcccaacaaaaaattatttttcattatattttataaacaaaaa 286  Q
    |||||| || ||||||||||| |||||||||||| ||||||||||||||||    
T  40745249 tttaggccttccaacaaaaaaatatttttcattagattttataaacaaaaa 40745299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 36066501 - 36066540
Alignment:
Q  246 ccaacaaaaaattatttttcattatattttataaacaaaa 285  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  36066501 ccaacaaaaaatcatttttcattagattttataaacaaaa 36066540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 14609114 - 14609063
Alignment:
Q  235 ctttaggtctcccaacaaaaaattatttttcattatattttataaacaaaaa 286  Q
    |||||| ||||||||||||||||||||||| |||| |||||| || ||||||    
T  14609114 ctttagatctcccaacaaaaaattattttttattagattttacaagcaaaaa 14609063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 14580158 - 14580118
Alignment:
Q  236 tttaggtctcccaacaaaaaattatttttcattatatttta 276  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  14580158 tttaggtctcccaacaaaaaataattttttattaaatttta 14580118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 287
Target Start/End: Original strand, 36576394 - 36576429
Alignment:
Q  252 aaaaattatttttcattatattttataaacaaaaat 287  Q
    ||||| ||||||||||||||||||||||||||||||    
T  36576394 aaaaaatatttttcattatattttataaacaaaaat 36576429  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 285
Target Start/End: Complemental strand, 41872459 - 41872426
Alignment:
Q  252 aaaaattatttttcattatattttataaacaaaa 285  Q
    |||||||||||||||||| |||||||||||||||    
T  41872459 aaaaattatttttcattaaattttataaacaaaa 41872426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 49275539 - 49275486
Alignment:
Q  233 cactttaggtctcccaacaaaaaattatttttcattatattttataaacaaaaa 286  Q
    ||||||||||| ||||| | ||||||||||||||||| |||||| || ||||||    
T  49275539 cactttaggtcccccaagagaaaattatttttcattagattttacaagcaaaaa 49275486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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