View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19454_low_2 (Length: 391)
Name: NF19454_low_2
Description: NF19454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19454_low_2 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 9452812 - 9452439
Alignment:
| Q |
18 |
ttacattcaacatagcatctcaccatgcacctgcaatcagtaaacatgattcccttagttttggtgggaactctacatgcaaggcttatgcaacagcccc |
117 |
Q |
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| T |
9452812 |
ttacattcaacatagcatctcaccatgcacctgcaatcagtaaacatgattcccttagttttggtgggaactctacatgcaatgcttatgcaacggcccc |
9452713 |
T |
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| Q |
118 |
taatttctcgtcgtggaattgcatgaaatgtttgcatgaagactgtgccttttgtgctaatacccagagtgaagtaagttctactatattcttctctacg |
217 |
Q |
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| T |
9452712 |
taatttctcgtcgtggaattgcatgaaatgtttgcatgaagactgtgccttttgtgctaatacccaaagtgaagtaagttctactatattcttctctacg |
9452613 |
T |
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| Q |
218 |
tgtctcattttcttaataaaataagaaatttaggtgagttgggttgaagagatttagcactgttaccagggtcagagcagacttcgagagtcagagaacg |
317 |
Q |
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| T |
9452612 |
tgtctcattttcttaataaaataagaaatttaggtgagttgggttgaagagatttagcactgttaccagggtcagagcagacctcgagagtcagagaacg |
9452513 |
T |
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| Q |
318 |
atgattagcttttgttataaaccaactatcctatgagttaaagttgttaagtaaaaggacatgaattttataac |
391 |
Q |
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| T |
9452512 |
atgattagcttttgttataaaccaactatcctatgagttaaagttgttaagtaaaaggacatgaattttataac |
9452439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 9441581 - 9441401
Alignment:
| Q |
18 |
ttacattcaacatagcatctcaccatgcacctgcaatcagtaaacatgattcccttagttttggtgggaactctacatgcaaggcttatgcaacagcccc |
117 |
Q |
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| T |
9441581 |
ttacattcaaccaggcagctcaccatgcaccttcactcagtatacaagattcacttagctttggtgggaactctacatgcaaggcttatacaacggcccc |
9441482 |
T |
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| Q |
118 |
taatttctcgtcgtggaattgcatgaaatgtttgcatgaagactgtgccttttgtgctaatacccagagtgaagtaagttc |
198 |
Q |
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| T |
9441481 |
aaatcacttgtcgtggaattgtatgcaatgtttgcatgaagattgtgcattttgtgccaatagccagaatgaagtaagttc |
9441401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 9441278 - 9441212
Alignment:
| Q |
325 |
gcttttgttataaaccaactatcctatgagttaaagttgttaagt--aaaaggacatgaattttata |
389 |
Q |
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| T |
9441278 |
gcttttgtcataaaccgactatcctataagtttaaattgttaagtaaaaaaggacatgaattttata |
9441212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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