View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19454_low_4 (Length: 345)
Name: NF19454_low_4
Description: NF19454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19454_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 25524179 - 25524023
Alignment:
| Q |
1 |
atttgaaacctgattcttctcacgttgtgcagagttttagaaataagaggctttttcttgagaattatgggacttgccccatatataatcatgatgcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25524179 |
atttgaaacctgattcttctcacgttgtgcagagttttagaattaagaggctttttcgtgagaattatgggacttgccccatatataatcatgatgcctt |
25524080 |
T |
|
| Q |
101 |
ataatgtgtctcatttttaaaattgatttaatgcttttgctatttatgacctctcaa |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25524079 |
ataatgtgtctcatttttaaaattgatttaatgcttttgctattcatgacctctcaa |
25524023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 25538801 - 25538665
Alignment:
| Q |
80 |
catatataatcatgatgccttataatgtgtctcattttt-aaaattga---------tttaatgcttttgctatttatgacctctcaatttca------t |
163 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| ||||||||||||||||| | |
|
|
| T |
25538801 |
catatatagtcatgatgccttataatgtgtctcattttttaaaattgagatgcctgatttaatgctttttgtattcatgacctctcaatttcaatttcat |
25538702 |
T |
|
| Q |
164 |
gtatgtgtactttgttgggaactttgtttctgtccaa |
200 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
25538701 |
gtatatgtactttgttgggaactttgattctgtccaa |
25538665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 335
Target Start/End: Complemental strand, 25524017 - 25523985
Alignment:
| Q |
303 |
cactggaacagtgttttctatctcatgatgatg |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
25524017 |
cactggaacagtgttttctatctcatgatgatg |
25523985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 44461277 - 44461222
Alignment:
| Q |
11 |
tgattcttctcacgttgtgcagagttttagaaataagaggctttttcttgagaatt |
66 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||| |
|
|
| T |
44461277 |
tgattcttctcagattgtgcagagtcttagaaataagagggtttttctcgagaatt |
44461222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University