View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19454_low_5 (Length: 319)
Name: NF19454_low_5
Description: NF19454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19454_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 48998561 - 48998862
Alignment:
| Q |
1 |
cttccctttatctagcctgaaacattgcagtattctggatgcccttttctgcgccaaggctgtacccacaagcgtcaactcaagcaatgacgatacaatc |
100 |
Q |
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| T |
48998561 |
cttccctttatctagcctgaaacattgcagtattctggatgcccttttctgcgccaaggctgtacccacaagcgtcaactcaagcaatgacgatacaatc |
48998660 |
T |
|
| Q |
101 |
cctgcctcaatcatgacttgtctatcagcataggctttatgtgccataatcatcaaaatgtatgaagccttctcttgacattcaggtgaatctgtccaat |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48998661 |
cctgcctcaatcatggcttgtctatcagcataggctttatgtgccataatcatcaaaatgtatgaagccttctcttgacattcaggtgaatctgtccaat |
48998760 |
T |
|
| Q |
201 |
tcaatacatcgaccaaaactgtgattgcatccttaacggcacttatagcttttctaccctcaggactcgacaccaaattgctcagaattgaaaggactct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48998761 |
tcaatacatcgaccaaaactgtgattgcatccttaacagcacttatagcttttctaccctcaggactcgacaccaaattgctcagaattgaaaggactct |
48998860 |
T |
|
| Q |
301 |
ct |
302 |
Q |
| |
|
|| |
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| T |
48998861 |
ct |
48998862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 42564055 - 42563939
Alignment:
| Q |
78 |
actcaagcaatgacgatacaatccctgcctcaatcatgacttgtctatcagcataggctttatgtgccataatcatcaaaatgtatgaagccttctcttg |
177 |
Q |
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|||||||||| |||||| |||| |||||||||| ||| |||| |||||| |||| ||||| ||||||||||||||||||| |||||| |||||||| |
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| T |
42564055 |
actcaagcaacaacgatataatctctgcctcaattatggcttgcctatcatcataagctttgcgtgccataatcatcaaaatatatgaaatattctcttg |
42563956 |
T |
|
| Q |
178 |
acattcaggtgaatctg |
194 |
Q |
| |
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||||| ||||||||||| |
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| T |
42563955 |
acatttaggtgaatctg |
42563939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 70 - 216
Target Start/End: Complemental strand, 2985031 - 2984885
Alignment:
| Q |
70 |
aagcgtcaactcaagcaatgacgatacaatccctgcctcaatcatgacttgtctatcagcataggctttatgtgccataatcatcaaaatgtatgaagcc |
169 |
Q |
| |
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||||| ||||||||| | ||||| |||||||||||||| |||||| | || | ||| |||| | |||||| | ||||| ||||||||| || ||| || |
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| T |
2985031 |
aagcgacaactcaagaagcgacgacacaatccctgcctctatcatggcctgcttgtcaccataagatttatgcgacataaccatcaaaatatacgaaacc |
2984932 |
T |
|
| Q |
170 |
ttctcttgacattcaggtgaatctgtccaattcaatacatcgaccaa |
216 |
Q |
| |
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|| || || |||||||||||||| |||||||||||||||||||||| |
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| T |
2984931 |
ttttcctggcattcaggtgaatcattccaattcaatacatcgaccaa |
2984885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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