View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19454_low_6 (Length: 319)
Name: NF19454_low_6
Description: NF19454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19454_low_6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 32041378 - 32041696
Alignment:
| Q |
1 |
aacccataaaaagtaaaaactatatcaaagtaaacttagaattaaaatgaaccccaaacttctccattctctaaattaattttgagattttacaacccca |
100 |
Q |
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| T |
32041378 |
aacctataaaaaataaaaactatatcaaagtaaacttagaattagaattaaccccaaacttctccattctctaaattaattttgagattttacaacccca |
32041477 |
T |
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| Q |
101 |
aatcatttgaaatccataagagggtaattaatataatttggaatgaaatgaaattcaagaacaatgaaatgaaattcaaacatcaagatattgaaatact |
200 |
Q |
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| T |
32041478 |
aatcatttgaaatccataaaaggttaattaatacaatttgaaatgaaatgaaattcaagaacaatgaaatgaaattcaaacatcaagatattgaaatact |
32041577 |
T |
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| Q |
201 |
gagaaccctaaaacctttaatcaagaacaaaatatccccccaaaagaaaaactacacccaacatcttgaaagacacttttggagattgacatcaccaaac |
300 |
Q |
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| T |
32041578 |
gagaaccctaaaacctttaatcaagaacaaaatattcccccaaaagaaaaactacacccaacatcttgaaagacacttttggagattgacatcaccaaat |
32041677 |
T |
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| Q |
301 |
cccacacccaacattaaac |
319 |
Q |
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| T |
32041678 |
cccacacccaacattaaac |
32041696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 32031089 - 32031125
Alignment:
| Q |
15 |
aaaaactatatcaaagtaaacttagaattaaaatgaa |
51 |
Q |
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| T |
32031089 |
aaaaactatatcaaagtaaacttagaattaaaatgaa |
32031125 |
T |
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