View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19454_low_7 (Length: 296)
Name: NF19454_low_7
Description: NF19454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19454_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 37222689 - 37222963
Alignment:
| Q |
18 |
ataccaatggtgatactggatccagatatatttggttagacaaatcaccagagttttcgtacgaagaactcgccaatgctacagataacttcagtttggc |
117 |
Q |
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| T |
37222689 |
ataccaatggtgatactggatccagatatatttggttagacaaatcaccagagttttcgtacgaagaactcgccaatgctacagataacttcagtttggc |
37222788 |
T |
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| Q |
118 |
tnnnnnnnttggtcaaggtggttttggtgaggtctactatggagagttgagaggccaggtttgtaatcgtagcattgttagttttactttgaaatcagtc |
217 |
Q |
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| T |
37222789 |
taaaaaaattggtcaaggtggttttggtgaggtctactatggagagttgagaggccaggtttgtaatcgtagcattgttagttttactttgaaatcagtc |
37222888 |
T |
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| Q |
218 |
ttaagagtctgaaattactattgattccctcagaggtggttctaaaattactattgattcctcgtaatttctctc |
292 |
Q |
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| T |
37222889 |
ataagagtctgaaattactattgattccctcagaggtggttctaaaattactattgattcctcgtaatttctctc |
37222963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 37216684 - 37216874
Alignment:
| Q |
18 |
ataccaatggtgatactggatccagatatatttggttagacaaatcaccagagttttcgtacgaagaactcgccaatgctacagataacttcagtttggc |
117 |
Q |
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| T |
37216684 |
ataccaatgatgataatggatccaaatatatttgggtggataaatcaccagagttttcgtacgaagaactagccaatgcaacagataacttcagtttggc |
37216783 |
T |
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| Q |
118 |
tnnnnnnnttggtcaaggtggttttggtgaggtctactatggagagttgagaggccaggtttgtaatcgtagcattgttagttttactttg |
208 |
Q |
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| T |
37216784 |
taaaaaaattggtcaaggtggttttggtgaggtctactatggagagctgagaggccaggtttgtaatcatagcattgttagttttgctttg |
37216874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 27 - 208
Target Start/End: Original strand, 37231615 - 37231796
Alignment:
| Q |
27 |
gtgatactggatccagatatatttggttagacaaatcaccagagttttcgtacgaagaactcgccaatgctacagataacttcagtttggctnnnnnnnt |
126 |
Q |
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| T |
37231615 |
gtgatactagatccaaatatatattggtggacaaatcaccaaagttctcatacaaagtactagccaatgctacagagaacttcagtttggctaaaaaaat |
37231714 |
T |
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| Q |
127 |
tggtcaaggtggttttggtgaggtctactatggagagttgagaggccaggtttgtaatcgtagcattgttagttttactttg |
208 |
Q |
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| T |
37231715 |
tggtcaaggtggttttggtgaggtctactatggagtgctgggaggcaaggtttgttatcataactttgttagttttactttg |
37231796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 208
Target Start/End: Complemental strand, 37386072 - 37385920
Alignment:
| Q |
56 |
gacaaatcaccagagttttcgtacgaagaactcgccaatgctacagataacttcagtttggctnnnnnnnttggtcaaggtggttttggtgaggtctact |
155 |
Q |
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| T |
37386072 |
gacaaatcacctaaattttcatacgaagaactagccaatgctactgataaattcagcttggctaacaaaattggtcaaggtggttttggtgaagtctact |
37385973 |
T |
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| Q |
156 |
atggagagttgagaggccaggtttgtaatcgtagcattgttagttttactttg |
208 |
Q |
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| T |
37385972 |
atggagagccgagaggcaaggtttgttatcatagcattgttagttttactttg |
37385920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 37197683 - 37197819
Alignment:
| Q |
67 |
agagttttcgtacgaagaactcgccaatgctacagataacttcagtttggctnnnnnnnttggtcaaggtggttttggtgaggtctactatggagagttg |
166 |
Q |
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| T |
37197683 |
agagttttcatatgaagaactagccaatgccacaaataacttcaacatggctaacaaaatcggtcaaggtggtttcggtgaagtctattacgcagagctg |
37197782 |
T |
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| Q |
167 |
agaggccaggtttgtaatcgtagcattgttagtttta |
203 |
Q |
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| ||| |||||||||||| |||||||||||| |||| |
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| T |
37197783 |
aatggcgaggtttgtaatcatagcattgttaggttta |
37197819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 37231842 - 37231894
Alignment:
| Q |
241 |
attccctcagaggtggttctaaaattactattgattcctc-gtaatttctctc |
292 |
Q |
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||||||||| ||| ||||||||||| |||||||||||| | |||||||||||| |
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| T |
37231842 |
attccctcaaaggcggttctaaaatgactattgattccactgtaatttctctc |
37231894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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