View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19454_low_8 (Length: 287)
Name: NF19454_low_8
Description: NF19454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19454_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 11599528 - 11599274
Alignment:
| Q |
20 |
catcgaacttgttaaaataaattaat----ctagagcttccgcacgccttctaacttctatttgttgttttcgagtgtcctaaatgaagaaataattaaa |
115 |
Q |
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| T |
11599528 |
catcgaacttgttaaaattaattaattaatctagagcttccgcacgccttctaacatctttttgttgttttcgagtgtcctaaatgaagaaataattaaa |
11599429 |
T |
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| Q |
116 |
atgaaaatccttgatttggcccacatgggatcacgaactagatggattcttcttttccaaatatggaaggactttaattaaaatttactaatatcccata |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11599428 |
atgaaaatccttgatttggcccacatgggatcacgaactagatagattcttcttttccaaatatggaagtactttaattaaaatttactaatatcccata |
11599329 |
T |
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| Q |
216 |
ctttcggagaaaactttgatgctttttatattgcatgcatctgtccacatgttat |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11599328 |
ctttcggagaaaactttgatgctttttatattgcatgcatctgtccacatgttat |
11599274 |
T |
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