View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19455_high_1 (Length: 611)
Name: NF19455_high_1
Description: NF19455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19455_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 11 - 592
Target Start/End: Complemental strand, 50765111 - 50764529
Alignment:
| Q |
11 |
cagcacagacacaattatgttaatggaattgaaatttgaattttatgcaggccggtaaatcctacatggccttaaaagtgttcgatgaaatgttaagcca |
110 |
Q |
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| T |
50765111 |
cagcacagacacaattatgttaatggaattgaaatttgaattttatgcaggccggtaaatcctacatggccttaaaagtgttcgatgaaatgttaagcca |
50765012 |
T |
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| Q |
111 |
aaagtgcaaacctaatatttgcacatatactgctctagtgaatgcatttgcaagagagggattatgtgagaaagcagaagaaatatttgagcagatgcaa |
210 |
Q |
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| T |
50765011 |
aaaatgcaaacctaatatttgcacatatactgctctagtgaatgcatttgcaagagagggattatgtgagaaagcagaagaaatatttgagcagatgcaa |
50764912 |
T |
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| Q |
211 |
gaagcaggacttgaacctgatgtatatgcttataatgcccttatggaagcttacaggttgttatatacgacagtataaatgcctttttgattgattaatg |
310 |
Q |
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| T |
50764911 |
gaagctggacttgaacctgatgtatatgcttataatgcccttatggaagcttacaggttgttatatacgacagtataaatgccttcttgattgattaatg |
50764812 |
T |
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| Q |
311 |
tgttatccctttgatctattggtttatatacctagagaaaacaaaaatcat-atttctcttccgggaacagtcgtgcaggctttccttatggagcagcag |
409 |
Q |
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| T |
50764811 |
tgttatccctttgatctattggtttatatacctagagaaaacaaaaatcataatttctcttcccggaacagtcgtgcaggctttccttatggagcagcag |
50764712 |
T |
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| Q |
410 |
aaattttttcattaatgcagcacatgggatgtgaaccagatcgagcctcttataatatcttagtagatgcatatgggaaagcaggttttcaagatggtaa |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764711 |
aaattttttcattaatgcagcacatgggatgtgaaccagatcgagcctcttataatatcttagtagatgcatatgggaaagcaggttttcaagatggtaa |
50764612 |
T |
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| Q |
510 |
tggtcttccctggaatgttatcattttctgtttatcaacataagccatgtttggataaacaaacttaattaagcatttataga |
592 |
Q |
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| T |
50764611 |
tggtcttccctggaatgttatcattttctgtttatcaacataagccatgtttggataaacaaacttaattaagcatttataga |
50764529 |
T |
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