View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19455_high_3 (Length: 512)

Name: NF19455_high_3
Description: NF19455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19455_high_3
NF19455_high_3
[»] chr8 (8 HSPs)
chr8 (13-258)||(7616291-7616536)
chr8 (293-494)||(7616055-7616256)
chr8 (193-241)||(14926902-14926950)
chr8 (197-240)||(27465457-27465500)
chr8 (193-241)||(4560604-4560652)
chr8 (193-236)||(39881646-39881689)
chr8 (193-241)||(3112225-3112273)
chr8 (193-241)||(7714344-7714392)
[»] chr1 (7 HSPs)
chr1 (193-241)||(32958739-32958787)
chr1 (188-232)||(15361808-15361852)
chr1 (194-240)||(10280752-10280798)
chr1 (196-236)||(4197174-4197214)
chr1 (195-239)||(23402135-23402179)
chr1 (193-241)||(24460321-24460369)
chr1 (193-241)||(33976280-33976328)
[»] chr4 (7 HSPs)
chr4 (193-236)||(47146046-47146089)
chr4 (193-240)||(2996675-2996722)
chr4 (194-236)||(29376006-29376048)
chr4 (194-236)||(46860021-46860063)
chr4 (193-234)||(39931301-39931342)
chr4 (193-241)||(11191599-11191647)
chr4 (193-241)||(54277243-54277291)
[»] chr6 (1 HSPs)
chr6 (194-231)||(3785652-3785689)
[»] chr3 (2 HSPs)
chr3 (203-241)||(9832675-9832713)
chr3 (213-241)||(44988365-44988393)
[»] chr5 (2 HSPs)
chr5 (194-239)||(1084061-1084106)
chr5 (201-241)||(34205351-34205391)
[»] chr2 (3 HSPs)
chr2 (194-234)||(14844908-14844948)
chr2 (193-241)||(16785280-16785328)
chr2 (193-241)||(40759262-40759310)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 7616536 - 7616291
Alignment:
Q  13 aatattaaatttcagatatgaaaacaaaagacattcaacataaagataaaatcttatgttcataaatagaccagcagaagaataagtttgaattgttttc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7616536 aatattaaatttcagatatgaaaacaaaagacattcaacataaagataaaatcttatgttcataaatagaccagcagaagaataagtttgaattgttttc 7616437  T
Q  113 atataacaaacaaaaaagtgaagtcaaattgttttcatatgataaataatcctagagcttatgaaaataagctgaaaacactcacaagtgcttatgacaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||    
T  7616436 atataacaaacaaaaaagtgaagtcaaattgttttcatatgataaataatcctagagcttatgaaaataagctaaaaacactcacaagtgaatatgacaa 7616337  T
Q  213 taaataagttcaaataagtcaatctaaacgagcttaatattaacga 258  Q
    || |||||||||||||||||||||||||||||||||||||||||||    
T  7616336 tagataagttcaaataagtcaatctaaacgagcttaatattaacga 7616291  T

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Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 293 - 494
Target Start/End: Complemental strand, 7616256 - 7616055
Alignment:
Q  293 cacttaccagcaagctgaaacaaaaacaagaaggccaagtaatctgatgaatccaacaaaaggaggtctcatttgaagaaccaaactgcaagaaataaca 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7616256 cacttaccagcaagctgaaacaaaaacaagaaggccaagtaatctgatgaatccaacaaaaggaggtctcatttgaagaaccaaactgcaagaaataaca 7616157  T
Q  393 ataattcatataaattcagtaattaaataatcacattaaaaaatgggggtgggtccatgtttgtaattgttctgaatgccaaagaaggtatatacttgtt 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7616156 ataattcatataaattcagtaattaaataatcacattaaaaaatgggggtgggtccatgtttgtaattgttctgaataccaaagaaggtatatacttgtt 7616057  T
Q  493 ct 494  Q
    ||    
T  7616056 ct 7616055  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 14926950 - 14926902
Alignment:
Q  193 ctcacaagtgcttatgacaataaataagttcaaataagtcaatctaaac 241  Q
    |||||||||||||||| || |||||||||||||||||||||||| ||||    
T  14926950 ctcacaagtgcttatgccagtaaataagttcaaataagtcaatccaaac 14926902  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 27465457 - 27465500
Alignment:
Q  197 caagtgcttatgacaataaataagttcaaataagtcaatctaaa 240  Q
    |||||||||||| ||||| |||||||||||||||||||||||||    
T  27465457 caagtgcttatgccaatagataagttcaaataagtcaatctaaa 27465500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 4560604 - 4560652
Alignment:
Q  193 ctcacaagtgcttatgacaataaataagttcaaataagtcaatctaaac 241  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||| ||||    
T  4560604 ctcacaagtgcttatgtcaatagataagctcaaataagtcaatccaaac 4560652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 39881689 - 39881646
Alignment:
Q  193 ctcacaagtgcttatgacaataaataagttcaaataagtcaatc 236  Q
    |||||||||| ||||| ||||| |||||||||||||||||||||    
T  39881689 ctcacaagtgtttatgccaatagataagttcaaataagtcaatc 39881646  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 3112225 - 3112273
Alignment:
Q  193 ctcacaagtgcttatgacaataaataagttcaaataagtcaatctaaac 241  Q
    |||||||||||||||| ||||||||||| | | ||||||||||| ||||    
T  3112225 ctcacaagtgcttatgtcaataaataagcttacataagtcaatccaaac 3112273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 7714344 - 7714392
Alignment:
Q  193 ctcacaagtgcttatgacaataaataagttcaaataagtcaatctaaac 241  Q
    |||||||||| |||||||| || ||||| ||||||||||||||| ||||    
T  7714344 ctcacaagtgtttatgacattatataagctcaaataagtcaatccaaac 7714392  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 32958739 - 32958787
Alignment:
Q  193 ctcacaagtgcttatgacaataaataagttcaaataagtcaatctaaac 241  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  32958739 ctcacaagtgcttatgacagtagataagctcaaataagtcaatctaaac 32958787  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 15361808 - 15361852
Alignment:
Q  188 aaacactcacaagtgcttatgacaataaataagttcaaataagtc 232  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||||    
T  15361808 aaacagtcacaaatgcttatgacagtaaataagttcaaataagtc 15361852  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 10280752 - 10280798
Alignment:
Q  194 tcacaagtgcttatgacaataaataagttcaaataagtcaatctaaa 240  Q
    |||||| |||||||| ||||| ||| |||||||||||||||||||||    
T  10280752 tcacaattgcttatgccaatagataggttcaaataagtcaatctaaa 10280798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 4197214 - 4197174
Alignment:
Q  196 acaagtgcttatgacaataaataagttcaaataagtcaatc 236  Q
    ||||||||||||| ||||  |||||||||||||||||||||    
T  4197214 acaagtgcttatgccaattgataagttcaaataagtcaatc 4197174  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 23402135 - 23402179
Alignment:
Q  195 cacaagtgcttatgacaataaataagttcaaataagtcaatctaa 239  Q
    ||||||||||||   ||||| ||||||||||||||||||||||||    
T  23402135 cacaagtgcttacaccaatagataagttcaaataagtcaatctaa 23402179  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 24460369 - 24460321
Alignment:
Q  193 ctcacaagtgcttatgacaataaataagttcaaataagtcaatctaaac 241  Q
    |||||||||||| ||| || || ||||||||||||||||||||| ||||    
T  24460369 ctcacaagtgctcatgtcagtagataagttcaaataagtcaatccaaac 24460321  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 33976280 - 33976328
Alignment:
Q  193 ctcacaagtgcttatgacaataaataagttcaaataagtcaatctaaac 241  Q
    |||||||||||| ||| || |||||||| ||||||||||||||| ||||    
T  33976280 ctcacaagtgctgatgtcattaaataagctcaaataagtcaatccaaac 33976328  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 47146046 - 47146089
Alignment:
Q  193 ctcacaagtgcttatgacaataaataagttcaaataagtcaatc 236  Q
    |||||||||||||||| ||||| |||||||||||||||||||||    
T  47146046 ctcacaagtgcttatgccaatatataagttcaaataagtcaatc 47146089  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 2996675 - 2996722
Alignment:
Q  193 ctcacaagtgcttatgacaataaataagttcaaataagtcaatctaaa 240  Q
    |||| ||||||||||| |||||||||||||||||||||  ||||||||    
T  2996675 ctcaaaagtgcttatgtcaataaataagttcaaataagctaatctaaa 2996722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 29376006 - 29376048
Alignment:
Q  194 tcacaagtgcttatgacaataaataagttcaaataagtcaatc 236  Q
    ||||||||||||||| ||||| ||||||||||||||| |||||    
T  29376006 tcacaagtgcttatgtcaatagataagttcaaataagccaatc 29376048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 46860021 - 46860063
Alignment:
Q  194 tcacaagtgcttatgacaataaataagttcaaataagtcaatc 236  Q
    |||||||||||||||  |||| |||||||||||||||||||||    
T  46860021 tcacaagtgcttatgtgaatagataagttcaaataagtcaatc 46860063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 39931342 - 39931301
Alignment:
Q  193 ctcacaagtgcttatgacaataaataagttcaaataagtcaa 234  Q
    |||||||||| ||||| |||||||||| ||||||||||||||    
T  39931342 ctcacaagtgtttatgtcaataaataaattcaaataagtcaa 39931301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 11191599 - 11191647
Alignment:
Q  193 ctcacaagtgcttatgacaataaataagttcaaataagtcaatctaaac 241  Q
    |||||||||||||||||||| | ||||  ||||||||| ||||||||||    
T  11191599 ctcacaagtgcttatgacaagatataaactcaaataagccaatctaaac 11191647  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 54277291 - 54277243
Alignment:
Q  193 ctcacaagtgcttatgacaataaataagttcaaataagtcaatctaaac 241  Q
    |||| ||||| ||||| || || ||||||||||||||||||||||||||    
T  54277291 ctcataagtgtttatgtcactagataagttcaaataagtcaatctaaac 54277243  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 3785689 - 3785652
Alignment:
Q  194 tcacaagtgcttatgacaataaataagttcaaataagt 231  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  3785689 tcacaagtgcttatgccaataaataagttcaaataagt 3785652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 9832713 - 9832675
Alignment:
Q  203 cttatgacaataaataagttcaaataagtcaatctaaac 241  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  9832713 cttatgtcaataaataagctcaaataagtcaatctaaac 9832675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 241
Target Start/End: Complemental strand, 44988393 - 44988365
Alignment:
Q  213 taaataagttcaaataagtcaatctaaac 241  Q
    |||||||||||||||||||||||||||||    
T  44988393 taaataagttcaaataagtcaatctaaac 44988365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 1084106 - 1084061
Alignment:
Q  194 tcacaagtgcttatgacaataaataagttcaaataagtcaatctaa 239  Q
    ||||||||||||||| || |||||||  ||||||||||||||||||    
T  1084106 tcacaagtgcttatgtcagtaaataaactcaaataagtcaatctaa 1084061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 34205351 - 34205391
Alignment:
Q  201 tgcttatgacaataaataagttcaaataagtcaatctaaac 241  Q
    |||||||| || |||||||||||||||||||||||| ||||    
T  34205351 tgcttatgtcagtaaataagttcaaataagtcaatccaaac 34205391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 14844948 - 14844908
Alignment:
Q  194 tcacaagtgcttatgacaataaataagttcaaataagtcaa 234  Q
    ||||||||||||||| ||||| |||| ||||||||||||||    
T  14844948 tcacaagtgcttatgccaatagataacttcaaataagtcaa 14844908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 16785328 - 16785280
Alignment:
Q  193 ctcacaagtgcttatgacaataaataagttcaaataagtcaatctaaac 241  Q
    ||||||| ||||||||||| |||||||| |||| |||||||||| ||||    
T  16785328 ctcacaaatgcttatgacagtaaataagctcaactaagtcaatccaaac 16785280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 40759262 - 40759310
Alignment:
Q  193 ctcacaagtgcttatgacaataaataagttcaaataagtcaatctaaac 241  Q
    |||||||||||||||| ||||| ||||| ||||||||| ||||| ||||    
T  40759262 ctcacaagtgcttatgtcaatagataagctcaaataaggcaatccaaac 40759310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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