View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19455_high_6 (Length: 338)
Name: NF19455_high_6
Description: NF19455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19455_high_6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 10 - 338
Target Start/End: Complemental strand, 3645479 - 3645151
Alignment:
| Q |
10 |
attattctatgtaaaagttagaagtatatatagtacaatcaagcatgagtaactaagattgaaaataccttctgctaaagagattaataacagcatctca |
109 |
Q |
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| T |
3645479 |
attattctatgtaaaagttagaagtatatatagtacaatcaagcatgagtaactaagattgaaaataccttctgctaaagagattaataacagcatctca |
3645380 |
T |
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| Q |
110 |
gcaaaatatatagctagcaaagttcattctttaggcaaaaagattaaaatgttggaaaagacactttttgagctatatacttaaaaaatgcaacattgga |
209 |
Q |
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| T |
3645379 |
gcaaaatatatagctagcaaagttcattctttaggcaaaaagattaaaatgttggaaaagacactttttgagctatatacttaaaaaatgcaacattgga |
3645280 |
T |
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| Q |
210 |
atagacatatacctgaatctgtgttaacatatacctaaaactttgtttccttccatgctcaaatgcctaacttgtctacttttgattcaagcatctcaca |
309 |
Q |
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| T |
3645279 |
atagacatatacctgaatctgtgttaacatatacctaaaactttgtttccttccatgctcaaatgcctaacttgtctacttttgattcaagcatctcaca |
3645180 |
T |
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| Q |
310 |
tgaaaaatatctatacatatacaaaaagt |
338 |
Q |
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| T |
3645179 |
tgaaaaatatctatacatacacaaaaagt |
3645151 |
T |
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