View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19455_low_11 (Length: 272)
Name: NF19455_low_11
Description: NF19455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19455_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 8051780 - 8051719
Alignment:
| Q |
18 |
atgtttggatatttttccaactttaagggatttgtaagtgttggatattttagtagggatat |
79 |
Q |
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| T |
8051780 |
atgtttggatatttttccaactttaagggatttgtaagtgttggatattttagtagggatat |
8051719 |
T |
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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 8059952 - 8059900
Alignment:
| Q |
24 |
ggatatttttccaactttaagggatttgtaagtgttggatattttagtaggga |
76 |
Q |
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| T |
8059952 |
ggatatttttccaactttgagggatgtgtaagttttggatattctagtaggga |
8059900 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 47547783 - 47547834
Alignment:
| Q |
25 |
gatatttttccaactttaagggatttgtaagtgttggatattttagtaggga |
76 |
Q |
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| T |
47547783 |
gatatttttccaattttgagggatgtgtaagttttggatattctagtaggga |
47547834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 49172374 - 49172294
Alignment:
| Q |
149 |
tacaattctattagacacaatgtgttgag-cattcctcatccacactataaaacaagagcaactagtcaaacaaactaaga |
228 |
Q |
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| T |
49172374 |
tacaattccattggacacaatatgttgagacattctttatccaaaccttaaaacaagaacaactagctaaacaaactaaga |
49172294 |
T |
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