View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19455_low_4 (Length: 377)
Name: NF19455_low_4
Description: NF19455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19455_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 2810786 - 2811148
Alignment:
| Q |
1 |
aacacaacaatatttatattcttctaggctactaacttataaattaacacaaataatactcggattttgaggattgaaatctatttttatattgactctt |
100 |
Q |
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| T |
2810786 |
aacacaacaatatttatattcttctaggctactaacttataaattaa-----ataatactcggattttgaggattgaaatctatttttatattgactctt |
2810880 |
T |
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| Q |
101 |
tttattctcttcattttttgctaattattattgtnnnnnnnnggttacttcattgcataaaaaccaaagaatgaagattataagcagaaaatcacaaaca |
200 |
Q |
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| T |
2810881 |
tttattctcttcattttttgctagttattattgtaaaaaaaaggttacttcattgcataaaaaccaaagaatgaagattataagcagaaaatcacaaaca |
2810980 |
T |
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| Q |
201 |
tggagatagtttcattaatatgagaaaaagtgggtttaatttcattaatgaaaaatataaataaacgaagtaatttcagaaagtaaatgatgatgaacaa |
300 |
Q |
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| T |
2810981 |
tggagataatttcattaatatgagaaaaagtggg-----tttcattaatgaaaaatataaataaacgaagtaatttcagaaagtaaatgatgatgaataa |
2811075 |
T |
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| Q |
301 |
catatcacaatcacgataaaag----------gaaagtgtgaaataaagatcgatagtgtgttatgatccgat |
363 |
Q |
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| T |
2811076 |
catatcacaatcatgataaaaggagagtgattgagagtgtgaaagaaagatcgatagtgtgttatgatccgat |
2811148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 172 - 307
Target Start/End: Original strand, 2808361 - 2808497
Alignment:
| Q |
172 |
tgaagattataagcagaaaatcacaaacatggagatagtttcattaatatgagaaaaagtgggtttaatttcattaatg-aaaaatataaataaacgaag |
270 |
Q |
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| T |
2808361 |
tgaagattataagtagaaaatcacgaacatggagatagtttcattaatctgaaaagaagtgagtttcattaacttaatgaaaaaatagaaataaatgaag |
2808460 |
T |
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| Q |
271 |
taatttcagaaagtaaatgatgatgaacaacatatca |
307 |
Q |
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| T |
2808461 |
caattttagaaagtaaacgatgatgaacaacatatca |
2808497 |
T |
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