View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19455_low_6 (Length: 350)
Name: NF19455_low_6
Description: NF19455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19455_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 2906314 - 2905996
Alignment:
| Q |
20 |
gttagaagccctcgtggtacaaaatccccttctcattcccctattggtggtggcggtggagagcgtcgcgttcaattcggcacagttgtggaggtgggag |
119 |
Q |
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| T |
2906314 |
gttagaagccctcgtggtacaaaatccccttctcattcccctgttggtggcggcggtggagagcgtcgtgttcaattcggcacagttgtggaggtgggag |
2906215 |
T |
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| Q |
120 |
atgaatttggtggcggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgat |
219 |
Q |
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| T |
2906214 |
atgaatttggtggcggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgat |
2906115 |
T |
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| Q |
220 |
aacggttgaacattagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatac |
319 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906114 |
aacggttgaacactagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatac |
2906015 |
T |
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| Q |
320 |
acacaagtgatgatgatgt |
338 |
Q |
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||||||||||||||||||| |
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| T |
2906014 |
acacaagtgatgatgatgt |
2905996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 2854286 - 2853968
Alignment:
| Q |
20 |
gttagaagccctcgtggtacaaaatccccttctcattcccctattggtggtggcggtggagagcgtcgcgttcaattcggcacagttgtggaggtgggag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| |||||||| ||||||||||||||| |||||| |
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| T |
2854286 |
gttagaagccctcgtggtacaaaatccccttctcattcccctgttggtggtggcggtgaggagtgtcgggttcaatttggcacagttgtggagatgggag |
2854187 |
T |
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| Q |
120 |
atgaatttggtggcggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854186 |
atgaatttggtggcggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgat |
2854087 |
T |
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| Q |
220 |
aacggttgaacattagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatac |
319 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854086 |
aacggttgaacactagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatac |
2853987 |
T |
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| Q |
320 |
acacaagtgatgatgatgt |
338 |
Q |
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||||||||||||||||||| |
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| T |
2853986 |
acacaagtgatgatgatgt |
2853968 |
T |
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