View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19455_low_8 (Length: 333)

Name: NF19455_low_8
Description: NF19455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19455_low_8
NF19455_low_8
[»] chr1 (1 HSPs)
chr1 (1-299)||(50765089-50765387)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 50765089 - 50765387
Alignment:
Q  1 ttaacataattgtgtctgtgctgtgaaacttttttatgtgctatgcatgtgggattcaacatactgaatatgctttataaattaagaaattatttatcct 100  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50765089 ttaacataattgtgtctgtgctgtgaaactttcctatgtgctatgcatgtgggattcaacatactgaatatgctttataaattaagaaattatttatcct 50765188  T
Q  101 aaatttaaaggtcattgctctcgacattgactccaccatggcactaaattataacaaaaaatggaggcaagtttggtcctggaggctcgccggggcagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50765189 aaatttaaaggtcattgctctcgacattgactccaccatggtactaaattatgacaaaaaatggaggcaagtttggtcctggaggctcgccggggcagag 50765288  T
Q  201 aaacccccaatgcagtcatcacattggtagcaggattcaaacttaggtctagtgggacttgagttgaatctttaccgactagaccaacttacatcacct 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50765289 aaacccccaatgcagtcatcacattggtagcaggattcaaacttaggtctagtgggacttgagttgaatctttaccgactagaccaacttacatcacct 50765387  T

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