View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19455_low_9 (Length: 308)
Name: NF19455_low_9
Description: NF19455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19455_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 3645174 - 3644894
Alignment:
| Q |
13 |
aatatctatacatatacaaaaagtggtacttttctatctcctttttatgaaagctagctatagatcatcaacataataagtgtcttacccctttgcacat |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
3645174 |
aatatctatacatacacaaaaagtggtacttttctatctcctttttatgaaagctagctatagatcagcaacataataagtgtcttacccctttgcactt |
3645075 |
T |
|
| Q |
113 |
tctatacatgttaattttagttagcatccacatttgcttgaataactaaaatgacttgtgtttgtttctgtctttcagtttctttgctatatgaatgaat |
212 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3645074 |
tctatacatattaattttagttagcatccacatttgcttgaataactaaaatgacttgtgtttgtttctgtctttcagtttctttgctatatgaatgaat |
3644975 |
T |
|
| Q |
213 |
ttgtctctcaccatatgcaaaaggtatgtcatatattatgtacccttcaaatctaatccactattatctttcttgttttct |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3644974 |
ttgtctctcaccatatgcaaaaggtatgtcatatattatgtacccttcaaatctaatccactattatctttcttgttttct |
3644894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University