View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19456_high_4 (Length: 439)
Name: NF19456_high_4
Description: NF19456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19456_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 4387382 - 4386993
Alignment:
| Q |
18 |
cttttaagtgaatatattcaaacacaactcatttcactttgaattcaatttaatcaaaatcaaattttgccatcacagcacatatcatcagaagaatgat |
117 |
Q |
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| T |
4387382 |
cttttaagtgaatatattcaaacacaactcatttcactttgaattcaatttaatcaaaatcaaattttgccaccacagcacatatcatcagaagaatgat |
4387283 |
T |
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| Q |
118 |
aagctaaaccatgtggccttttggcacgcacatggcatgtaaaggtgattatatttgcgtttttcctagcccnnnnnnnagcaatagttgaaacctttca |
217 |
Q |
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| T |
4387282 |
aagctaaaccatgtggccttttggcacgcacatggcatgtaaaggtgattatatttgcgtttttcctagccctttttttagcaatagttgaaacctttca |
4387183 |
T |
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| Q |
218 |
ttggaattgttttaaccaaataccaatggcatcggaatggcatgaatcacagccataatataaggtaccaattagtcacaattatagagaaacgtaccgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4387182 |
ttggaattgttttaaccaaataccaatggcatcggaatggcatgaatcacagccataatataaggtaccaattagtcacaattatagagaaacgtaccgt |
4387083 |
T |
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| Q |
318 |
gatacacataaccatgtccccatgattcttggctgcacacacatgtgagtttccttttaaaaagacgaatatataagccaaaccataccc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4387082 |
gatacacataaccatgtccccatgattcttggctgcacacacatgtgagtttccttttaaaaagacgaatatataagccaaaccataccc |
4386993 |
T |
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