View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19456_high_8 (Length: 309)
Name: NF19456_high_8
Description: NF19456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19456_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 3387389 - 3387102
Alignment:
| Q |
17 |
aagaacatgaaactaggggacaaactcagtcctagtatcgacaaagccatttttggttgtaaggttggtgttgttgtcttctctcctaattattgcgact |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3387389 |
aagaacatgaaactaggggacaaactcagtcctaatatcgacaaagccatttttgattgtaaggttggtgttgttgtcttctctcctaattattgcgact |
3387290 |
T |
|
| Q |
117 |
cttattattgtctccatgaactcgctcttctcatggagacnnnnnnnngagtcgtgccaatccttttcgacgtagaattgtcgcaacttatggtcaagga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3387289 |
cttattattgtctccatgaactcgctcttctcatggagacaaaaaaaagagccgtgccaatccttttcgacgtagaattgtcgcaacttatggtcaagga |
3387190 |
T |
|
| Q |
217 |
cgacggaacacgctctcagaaacaacttctaaggtacaatttagcactccaagaagccaaagatactgtggcgttaccctttgcttct |
304 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
3387189 |
cgacggaacacgctctcaggaacaacttctaaggtacaatttagcactccaagaagccaaagataccgtggcgttaccctttgattct |
3387102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 3393903 - 3393649
Alignment:
| Q |
19 |
gaacatgaaactaggggacaaactcagtcctagtatcgacaaagccatttttggttgtaaggttggtgttgttgtcttctctcctaattattgcgactct |
118 |
Q |
| |
|
||||||||||| ||| |||||||| || | |||||| ||||| ||| |||||||||||||||||||| || ||||||||| |||||| |||||| |
|
|
| T |
3393903 |
gaacatgaaaccaggagacaaactatttcatcatatcgataaagcaattattggttgtaaggttggtgttaccgtgttctctcctcgttattgtgactct |
3393804 |
T |
|
| Q |
119 |
tattattgtctccatgaactcgctcttctcatggagacnnnnnnnngagtcgtgccaatccttttcgacgtagaattgtcgcaacttatggtcaaggacg |
218 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| ||||||| || ||| | ||||||||| || |||||| |||||||||||||||| |
|
|
| T |
3393803 |
tattattgtctccacgaactcgctcttctgatggagacaaaaaaaagagtcgttcctatcttcttcgacgtaaaaccgtcgcagcttatggtcaaggacg |
3393704 |
T |
|
| Q |
219 |
acggaacacgctctcagaaacaacttctaaggtacaatttagcactccaagaagc |
273 |
Q |
| |
|
||||||| |||||| |||||| |||| ||||| | ||||||||| ||||||| |
|
|
| T |
3393703 |
acggaacttgctctccgaaacagcttcgaaggtttagtttagcactagaagaagc |
3393649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 35761616 - 35761698
Alignment:
| Q |
71 |
ggttgtaaggttggtgttgttgtcttctctcctaattattgcgactcttattattgtctccatgaactcgctcttctcatgga |
153 |
Q |
| |
|
||||| || |||||||||| ||| || ||||| | |||||| |||||||||| |||||||||||| || |||||||||||||| |
|
|
| T |
35761616 |
ggttgcaaagttggtgttgctgtgttttctccaacttattgtgactcttatttttgtctccatgagcttgctcttctcatgga |
35761698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University