View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19456_low_2 (Length: 558)
Name: NF19456_low_2
Description: NF19456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19456_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 13 - 542
Target Start/End: Complemental strand, 45693112 - 45692567
Alignment:
| Q |
13 |
tcatcagctgtagaattaaatgctagtggaacagcaggactaatggaaaccgtggaatcggcttcagcctctaagttaaaggatc--------------- |
97 |
Q |
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| T |
45693112 |
tcatcagctgtagaattaaatgctagtggaacagcaggactaatggaaaccgtggaatcggcttcagcctctaagttaaaggatcaaatgcctaagttaa |
45693013 |
T |
|
| Q |
98 |
------caatgccaaatgtgaactcacaagttatgctaaacaacaagggatgtagctcaacaaatcaaatgtcgatccaggtcagtttgtacgaagatat |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45693012 |
aggatccaatgccaaatgtgaactcacaagttatgctaaacaacaagggatgtagctcaacaaatcaaatgtcgatccaggtcagtttgtacgaagatat |
45692913 |
T |
|
| Q |
192 |
ctccttttctgtttttgtgcatannnnnnnngttatgttccaacctcacgtccactgaaccgnnnnnnngaagtattgtccactttgggctggagtattt |
291 |
Q |
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| T |
45692912 |
ctccttttctgtttttgtgcatattttttttgttatgttccaacctcaagtccactgaaccgtttttttgaagtattgtccgctttgggctggagtattt |
45692813 |
T |
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| Q |
292 |
aataaaacaaatttaaaggaacttctgatttgttagactaaaaaatatataggaactttaaatatcattgtgaataagtgtatgaagattgaaacctgta |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45692812 |
aataaaacaaatttaaaggaacttctgatttgttagactaaaaaatatgtaggaactttaaatatcattgtgaata-gtgtatgaagattgaaacctgta |
45692714 |
T |
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| Q |
392 |
ttgtttgttcttgacaaagtgttatgacagggaactcaatacaattttcagataaaagttgtagataaatgcacacattattacaattcgtttccactaa |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45692713 |
ttgtttgttcttgacaaagtgttatgacagggaactcaatacaattttcagataaaagttgtagacaaatgcacacattattacaattcgtttccactaa |
45692614 |
T |
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| Q |
492 |
attgttcttttgtattaatttgtcttttcatttagccgactatatcattaa |
542 |
Q |
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| T |
45692613 |
attgttcttttgt----atttgtcttttcatttagccgactatatcattaa |
45692567 |
T |
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