View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19456_low_5 (Length: 427)

Name: NF19456_low_5
Description: NF19456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19456_low_5
NF19456_low_5
[»] chr2 (7 HSPs)
chr2 (12-411)||(2327055-2327454)
chr2 (55-411)||(2330770-2331126)
chr2 (33-407)||(2303504-2303878)
chr2 (22-411)||(2321201-2321591)
chr2 (12-407)||(2351080-2351475)
chr2 (35-411)||(2293887-2294263)
chr2 (35-411)||(2310218-2310594)
[»] chr8 (4 HSPs)
chr8 (18-410)||(41127083-41127478)
chr8 (219-353)||(26506749-26506883)
chr8 (219-332)||(26494725-26494838)
chr8 (69-185)||(26494893-26495009)
[»] chr4 (1 HSPs)
chr4 (155-202)||(55017070-55017117)
[»] chr5 (1 HSPs)
chr5 (70-191)||(15176287-15176408)


Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 12 - 411
Target Start/End: Complemental strand, 2327454 - 2327055
Alignment:
Q  12 catcatcacggtgaattcaaatttttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattcc 111  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327454 catcaccacggtgaattcaaatttttctgacaaatcgacatggccaccctccggaaccttccaatcgaaattccaaaccaaattagccacaaaatattcc 2327355  T
Q  112 aaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcat 211  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327354 aaatggagtaaagctaaattatatcccggacaaattctcctaccagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcat 2327255  T
Q  212 ccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttagg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327254 ccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttagg 2327155  T
Q  312 caccaaataaccattcaaaaccacatcatcgctcattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttc 411  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2327154 caccaaataaccattcaaaaccacatcatcgctcactgcatgaggcaacacaaaatgccctggtggatgacgcctcaacccttccaaaaccacacacttc 2327055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 55 - 411
Target Start/End: Complemental strand, 2331126 - 2330770
Alignment:
Q  55 ccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctat 154  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||      
T  2331126 ccaccctcgggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatgaagcaaagctaaattatatccaggacaaattctcctcc 2331027  T
Q  155 cagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctccca 254  Q
    |||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2331026 cagctccaaatggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctccca 2330927  T
Q  255 aacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgctcattgcatga 354  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| |||    
T  2330926 aacacgagggtccaaccccatctctgcaaccataaaattcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctcgctcactgcgtga 2330827  T
Q  355 ggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttc 411  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  2330826 ggcaacacgaaatgccctggtggatgacgcctcaacccttccaaaaccacgcacttc 2330770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 33 - 407
Target Start/End: Complemental strand, 2303878 - 2303504
Alignment:
Q  33 tttttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaatta 132  Q
    ||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  2303878 tttttccgacaaatcaacatagccgccctctggaagcttccaatcgaaattccaaaccaaattagccacaaaatattctaaatggagcaaagctaaatta 2303779  T
Q  133 tatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggct 232  Q
      | | ||||||||||| || |||||| |||||||||||||||| ||||| |||||||||||||| |||||| ||||||||||| |||||||||||||||    
T  2303778 agtgcaggacaaattctcctttcagcttcaaacggcatcatctttatctccttactccctgtaatgtcaaaattctcatccttccaaaacctttctggct 2303679  T
Q  233 taaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaac 332  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2303678 taaactccattggatcctcccaaacacgaggatcccaccccatctccgccagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaac 2303579  T
Q  333 cacatcatcgctcattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacaca 407  Q
    |||||| ||  |||  || || ||||||| ||||||||| |||||||||||||| |||||||||||||| |||||    
T  2303578 cacatcctctttcaccgcgtgtggcaacagaaaatgccccggtggatgacgcctcaacccttccaaaacaacaca 2303504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 22 - 411
Target Start/End: Complemental strand, 2321591 - 2321201
Alignment:
Q  22 gtgaattcaaatttttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagta 121  Q
    |||||||||  ||||||||||||||| |||||||||||||| |||| || ||||| ||||||||||||||| |||||||||||||||||||||||||| |    
T  2321591 gtgaattcatctttttccgacaaatcaacatggccaccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagca 2321492  T
Q  122 aagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaa 221  Q
    |||||||||||  ||| ||||||||||| ||  |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  2321491 aagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccctataatatcaaaagtctcatccttcaaaaa 2321392  T
Q  222 cctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataa 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | || |||||||||||||||||||||||||||||||||||||    
T  2321391 cctttctggcttaaactccattggatcctcccaaacacgaggatcccacgccatctccgacagcatgaaattcaccgtcccatttttaggcaccaaataa 2321292  T
Q  322 ccattcaaaaccacatcatcgctcattgcatgaggcaacacaaaatg-ccctggtggatgacgccttaacccttccaaaaccacacacttc 411  Q
    || |||||||||||||| ||  |||  |  || | |||||||||||| |||||||||||||||||| | ||||||||||||||| ||||||    
T  2321291 ccgttcaaaaccacatcctctttcaccgtgtgtgccaacacaaaatgcccctggtggatgacgcctcatcccttccaaaaccacgcacttc 2321201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 407
Target Start/End: Complemental strand, 2351475 - 2351080
Alignment:
Q  12 catcatcacggtgaattcaaatttttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattcc 111  Q
    ||||| ||| ||||||||   ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2351475 catcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattcc 2351376  T
Q  112 aaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcat 211  Q
    || || || ||||||||||||||||| ||||| ||||| ||| || | ||||| ||||||||||| |||||||||||||| ||||| ||||| || ||||    
T  2351375 aagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaatggcatcatctttatctctttactccccgtaatgtcaaatgtttcat 2351276  T
Q  212 ccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttagg 311  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||    
T  2351275 ccttcaaaaacctctctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctctgccaccataaaattgaccgtcccatttttagg 2351176  T
Q  312 caccaaataaccattcaaaaccacatcatcgctcattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacaca 407  Q
    |||||||||||| || |||| |||||| ||  |||  || || |||||||||  |||||| |||||||||||||| ||||||||||||||||||||    
T  2351175 caccaaataaccgttaaaaagcacatcctctgtcaccgcgtgtggcaacacattatgccccggtggatgacgcctcaacccttccaaaaccacaca 2351080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 35 - 411
Target Start/End: Complemental strand, 2294263 - 2293887
Alignment:
Q  35 tttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattata 134  Q
    |||||| |||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||      
T  2294263 tttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaag 2294164  T
Q  135 tcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggctta 234  Q
    ||| ||||||||||||||  |||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  2294163 tccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggctta 2294064  T
Q  235 aactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaacca 334  Q
    |||||||  || |||||||||||||||||||||||| ||||||| |||| || ||||||||||||||| |||||||||||||||||||| | ||||||||    
T  2294063 aactccaacgggtcctcccaaacacgaggatccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaacca 2293964  T
Q  335 catcatcgctcattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttc 411  Q
    |||| ||  |||  || || ||||||  ||| | ||| |||||||||||||| ||||||||||||||||||||||||    
T  2293963 catcctctttcaccgcgtgtggcaacggaaatttccccggtggatgacgcctcaacccttccaaaaccacacacttc 2293887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 35 - 411
Target Start/End: Complemental strand, 2310594 - 2310218
Alignment:
Q  35 tttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattata 134  Q
    |||||| |||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      
T  2310594 tttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaag 2310495  T
Q  135 tcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggctta 234  Q
    ||| ||||||||||||||  |||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||||||||||||||||||||||||    
T  2310494 tccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctggaatgacaaaagtctcatccttcaaaaacctttctggctta 2310395  T
Q  235 aactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaacca 334  Q
    ||||||| ||| ||||||||||||||| |||||||| ||||||| ||||  | ||||||||||||||| |||||||||||||||||||| | ||||||||    
T  2310394 aactccaatgggtcctcccaaacacgacgatccaacgccatctccgccagaaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaacca 2310295  T
Q  335 catcatcgctcattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttc 411  Q
    |||| ||  |||  || || ||||||  ||| | ||| | |||||||||||| ||||||||||||||||||||||||    
T  2310294 catcctctttcaccgcgtgtggcaacggaaatttccccgatggatgacgcctcaacccttccaaaaccacacacttc 2310218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 41127478 - 41127083
Alignment:
Q  18 cacggtgaattcaaatttttccgacaaatcgacatggcca---ccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaa 114  Q
    |||||||||||||  ||||||||||||||| ||||  |||   |||||| ||| ||||||||  |||||||| ||||||||||||||||| |||||||||    
T  41127478 cacggtgaattcagttttttccgacaaatcaacataaccagctccctctagaatcttccaattaaaattccagaccaaattagccacaaagtattccaaa 41127379  T
Q  115 tggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatcct 214  Q
    ||||| ||||||||||||||||| ||||||||||| ||  || ||||||||||||||||||| ||||||||| |||| ||||||||||||| ||||||||    
T  41127378 tggagcaaagctaaattatatccaggacaaattctcctcccaactccaaacggcatcatctttatctctttagtcccggtaatatcaaaagcctcatcct 41127279  T
Q  215 tcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcac 314  Q
    |||||||||||||||| |||||||||| |||||| |||||||||| ||| |||  ||| || ||||||||||||||||||||   | ||||||||||||     
T  41127278 tcaaaaacctttctggtttaaactccaatggatcttcccaaacactagggtccctccctatgtctgccaccatgaaattcactaccacatttttaggcag 41127179  T
Q  315 caaataaccattcaaaaccacatcatcgctcattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacactt 410  Q
    ||| ||||| |  ||||||||||| ||  |||  ||||| ||||||||||| ||||| ||||| |||| ||| | ||||||||||| |||||||||    
T  41127178 caagtaaccgtcgaaaaccacatcctccttcaccgcatggggcaacacaaagtgccccggtgggtgacacctcagcccttccaaaatcacacactt 41127083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 353
Target Start/End: Complemental strand, 26506883 - 26506749
Alignment:
Q  219 aaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaa 318  Q
    |||||| |||||||| ||  |||| ||||||||||||||||  |||||| |||| | |||||||||||| ||||| || ||||||||||||||||||||     
T  26506883 aaacctatctggcttgaatgccatgggatcctcccaaacacttggatcccacccaacctctgccaccataaaattaactgtcccatttttaggcaccaag 26506784  T
Q  319 taaccattcaaaaccacatcatcgctcattgcatg 353  Q
    ||||| || |||| |||||| ||| ||| ||||||    
T  26506783 taaccgttaaaaatcacatcctcggtcactgcatg 26506749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 219 - 332
Target Start/End: Complemental strand, 26494838 - 26494725
Alignment:
Q  219 aaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaa 318  Q
    |||||| |||||||||||| || | ||||||||||||||    ||||| || || || ||||||||||| |||||||| ||||||||||||||||||||     
T  26494838 aaacctctctggcttaaacaccgtaggatcctcccaaaccgttggatctaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaag 26494739  T
Q  319 taaccattcaaaac 332  Q
    ||||||||||||||    
T  26494738 taaccattcaaaac 26494725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 185
Target Start/End: Complemental strand, 26495009 - 26494893
Alignment:
Q  69 cttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggc 168  Q
    |||||| || || ||| ||||||||||||| ||||| ||||| |||||||| |  || || |||||  | |||||||| || ||  | ||||||||||||    
T  26495009 cttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggc 26494910  T
Q  169 atcatcttgatctcttt 185  Q
    |||||||| ||||||||    
T  26494909 atcatctttatctcttt 26494893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 55017117 - 55017070
Alignment:
Q  155 cagctccaaacggcatcatcttgatctctttactccctgtaatatcaa 202  Q
    |||| ||||||||||||||||| ||||||||| | |||||||||||||    
T  55017117 cagcaccaaacggcatcatcttcatctctttagttcctgtaatatcaa 55017070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 15176287 - 15176408
Alignment:
Q  70 ttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggca 169  Q
    ||||| || |||||| |||| ||||| || ||||| |||||||| || |  || ||||||  ||| || ||||| ||||| ||  | |||||||| ||||    
T  15176287 ttccactcaaaattcaaaacaaaattggcaacaaagtattccaagtgcaacaatgctaaaccatagccaggacacattctcctccctgctccaaatggca 15176386  T
Q  170 tcatcttgatctctttactccc 191  Q
    ||||||| ||||||||||||||    
T  15176387 tcatctttatctctttactccc 15176408  T

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