View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19456_low_6 (Length: 427)
Name: NF19456_low_6
Description: NF19456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19456_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 13714700 - 13714289
Alignment:
| Q |
1 |
ttgatgtgagttaaaatattgataggacatgataagttttggtggagtgctataatctaaccatgnnnnnnntaggtccattatggaccaacttttttac |
100 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| |
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| T |
13714700 |
ttgatgtgggttaaaatattgattggacatgataagttttggtggagtgctctaatctaaccataaaaaaaataggtctattatggaccaacttttttac |
13714601 |
T |
|
| Q |
101 |
aggtccaatttataagaaaccatctttttgtctttcctctactttagttttatgtcttcttatgtactagttcatccttctatactagacgttctttgga |
200 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |
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| T |
13714600 |
aggtccaatttatacggaaccatctttttgtctttcctctactttagttttatgtcttcttaagtactagttcatccttctatactagacgtcctttgaa |
13714501 |
T |
|
| Q |
201 |
gtagtctaaaaacccgcactaagggctagacctattagctcattacccatctccattgaaagttcaactcccaagggtgaagaacaaatatttgctaata |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13714500 |
gtagtctagaaacccgcactaagggctagacctattagctcattacccatctccattgaaagttcaactcccaagggtgaagaacaaatatttgttaata |
13714401 |
T |
|
| Q |
301 |
gtcaaagtgctattcatcttggtgagaatccaacttcttgtaataggttcaaacacattgattcgagatatgattgaacacatggcgttatagatgctat |
400 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13714400 |
gtcaaagtgctattcatcttggtaagaatccaactttttgtaataggttcaaacacattgattcgagatatgattgaatacatggcgttatagatgctat |
13714301 |
T |
|
| Q |
401 |
gttgttagagtt |
412 |
Q |
| |
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|||||||||||| |
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| T |
13714300 |
gttgttagagtt |
13714289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 4849198 - 4849311
Alignment:
| Q |
1 |
ttgatgtgagttaaaatattgataggacatgataagttttggtggagtgctataatctaaccatgnnnnnnntaggtccattatggaccaacttttttac |
100 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||| ||| |||||||||||||||||||||||| |
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| T |
4849198 |
ttgatgtgggttaaaatattgataggacatgataaattttgatggaatgctataatcaaaccatgaaaaaaatagatccattatggaccaacttttttac |
4849297 |
T |
|
| Q |
101 |
aggtccaatttata |
114 |
Q |
| |
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|||||||||||||| |
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| T |
4849298 |
aggtccaatttata |
4849311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 45907470 - 45907357
Alignment:
| Q |
1 |
ttgatgtgagttaaaatattgataggacatgataagttttggtggagtgctataatctaaccatgnnnnnnntaggtccattatggaccaacttttttac |
100 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
45907470 |
ttgatgtgggttaaaatatttataggacatgataaattttggtggagtgctataatctaaccatgaaaaaaataggtctattatggaccaacttttttac |
45907371 |
T |
|
| Q |
101 |
aggtccaatttata |
114 |
Q |
| |
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|||||||||||||| |
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| T |
45907370 |
aggtccaatttata |
45907357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 22918216 - 22918318
Alignment:
| Q |
5 |
tgtgagttaaaatattgataggacatgataagttttggtggagtgctataatctaaccatgnnnnnnntaggtccattatggaccaacttttttacaggt |
104 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22918216 |
tgtgggttaaaatattgataggacatgataagttttggtggagtgctaaaatctaaccatgaaaaaaataggtccattatggaccaacttttttacaggt |
22918315 |
T |
|
| Q |
105 |
cca |
107 |
Q |
| |
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||| |
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|
| T |
22918316 |
cca |
22918318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 4783848 - 4783753
Alignment:
| Q |
19 |
ttgataggacatgataagttttggtggagtgctataatctaaccatgnnnnnnntaggtccattatggaccaacttttttacaggtccaatttata |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||| ||||||||||| |
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| T |
4783848 |
ttgataggacatgataagttttggtggagtgctataatctaaccatgaaaaaaataggtctattatgaaccaacttttttacagatccaatttata |
4783753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 1626810 - 1626890
Alignment:
| Q |
132 |
ctttcctctactttagttttatgtcttcttatgtactagttcatccttctatactagacgttctttggagtagtctaaaaacc |
214 |
Q |
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||||||| ||||||| |||| ||||| ||||||| |||||||| |||| | |||||||| | |||||||||||||| ||||| |
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| T |
1626810 |
ctttcctttactttattttt--gtctttttatgtaatagttcatgcttccacactagacgctttttggagtagtctagaaacc |
1626890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 9021048 - 9021116
Alignment:
| Q |
133 |
tttcctctactttagttttatgtcttcttatgtactagttcatccttctatactagacgttctttggag |
201 |
Q |
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|||||| || |||| ||||||||||||||| || ||||||||||||| |||||| | | ||||||||| |
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| T |
9021048 |
tttcctttattttatttttatgtcttcttagataatagttcatccttcaatactaaatgctctttggag |
9021116 |
T |
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