View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19456_low_9 (Length: 300)
Name: NF19456_low_9
Description: NF19456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19456_low_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 4787708 - 4787425
Alignment:
| Q |
17 |
agatggtactaatgatgattccaaagcccaacatatatcgttccattgatttatttatttatatatgcttacaaatttgaatagggaatctaacatttca |
116 |
Q |
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| T |
4787708 |
agatggtactaatgatgattccaaagcccaacatatatcgttccattgatttatttatttatatatgcttacaaattagaatagggaatctaacatttca |
4787609 |
T |
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| Q |
117 |
aaacaacatcaagattacccacacaaacaaaacctagaagcattaaaccgtaatttattcttgatctataaaatggaactaatgcttcgttcaattatat |
216 |
Q |
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| T |
4787608 |
aaacaacatcaagattacccacacaaacaaaacctagaagcattaaaccgtaatttattcttgatctataaaatggaactaatgcttcgttcaattatat |
4787509 |
T |
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| Q |
217 |
ttgactggattatatgcccattcattgattgcacacaccccatactctttattagtgttccttttgatatgcatataaccctcc |
300 |
Q |
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| T |
4787508 |
ttgactggattatatgcccattcattgattgcacacaccccatactctttattagtgttccttttgatatgcatataaccctcc |
4787425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 210 - 300
Target Start/End: Complemental strand, 4782769 - 4782679
Alignment:
| Q |
210 |
attatatttgactggattatatgcccattcattgattgcacacaccccatactctttattagtgttccttttgatatgcatataaccctcc |
300 |
Q |
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| T |
4782769 |
attatatttgactggattataagcccatgaatttatagcacacaccccatactttttatttgtgttccttttgatatgcatataaccctcc |
4782679 |
T |
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