View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19457_high_1 (Length: 625)
Name: NF19457_high_1
Description: NF19457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19457_high_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 603; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Original strand, 37222916 - 37223534
Alignment:
| Q |
1 |
cctcagaggtggttctaaaattacaattgattcctcgtaatttctctcactttcaattgtatgtataaaatcataccatatacaggaaaggtgctatgta |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37222916 |
cctcagaggtggttctaaaattactattgattcctcgtaatttctctcactttcaattgtatgtataaaatcataccatatacaggaaaggtgctatgta |
37223015 |
T |
|
| Q |
101 |
ccagaattcattaaatttgttttaaactcattctaacaagcatagtatttggaataattttttcttgttgctaacaataaattccatgtgcctatttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37223016 |
ccagaattcattaaatttgttttaaactcattctaacaagcatagtatttggaataattttttcttgttgctaacaataaattccatgtgcctatttcaa |
37223115 |
T |
|
| Q |
201 |
attttatgttcttttgttaagtaagctgtctttaattacacagaaaattgcaatcaagaagatgaagatgtaagcaacaagagaatttctttctgaactg |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
37223116 |
attttatgttcgtttgttaagtaagctgtctttaattacacagaaaattgcaatcaagaagatgaagatgcaagcaacaagagaatttctttctgaactg |
37223215 |
T |
|
| Q |
301 |
aaagtgttaacaagtgttcatcaccggaacctggtaaagcatgttttgttttaccttttttattataaaagtaattgttgctttattaactttcttcagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37223216 |
aaagtgttaacaagtgttcatcaccggaacctggtaaagcatgttttgttttaccttttttattataaaagtaattgttgctttattaactttcttcagt |
37223315 |
T |
|
| Q |
401 |
aactttgctgtttatattatattctttaatgtatcagtaattttgtaacctatatctatctattgttatgtccatataggtacacttgattggatattgt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
37223316 |
aactttgctgtttatattatattctttaatgtatcagtaattttgtaacctatatctatctattgttatgttcatataggtacacttgattggatattgt |
37223415 |
T |
|
| Q |
501 |
gttgagggatttctattccttgtgtatgaatacatggaaaatggaaacttaaaccaacatctacataattcaggtgatattattataaacacattttgaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37223416 |
gttgagggatttctattccttgtgtatgaatacatggaaaatggaaacttaaaccaacatctacataattcaggtgatattattataaacacattttgaa |
37223515 |
T |
|
| Q |
601 |
tatttgttcttgatgatgt |
619 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
37223516 |
tatttgttcttgatgatgt |
37223534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 37231846 - 37232444
Alignment:
| Q |
1 |
cctcagaggtggttctaaaattacaattgattcctc-gtaatttctctcactttcaattgtatgtataaaatcataccatatacaggaaaggtgctatgt |
99 |
Q |
| |
|
||||| ||| ||||||||||| || ||||||||| | ||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
37231846 |
cctcaaaggcggttctaaaatgactattgattccactgtaatttctctcattttcaatggtatatataaaatcataccatatacaggaaaggtgctatgc |
37231945 |
T |
|
| Q |
100 |
accagaattcattaaatttgttttaaactcattctaacaagcatagtatttggaataattttttcttgttgctaacaataaattccatgtgcctatttca |
199 |
Q |
| |
|
|||||| ||||| |||||||| |||||| ||||||||||||||||||| ||| | ||||||||||| ||||||| |||||| |||||||||||| |
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|
| T |
37231946 |
accagatttcatcgaatttgttataaacttattctaacaagcatagtatagtgaagagctttttcttgtttgtaacaatccattccacgtgcctatttca |
37232045 |
T |
|
| Q |
200 |
aattttatgttcttttgttaagtaagctgtctttaattacacagaaaattgcaatcaagaagatgaagatgtaagcaacaagagaatttctttctgaact |
299 |
Q |
| |
|
| || |||||| ||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
37232046 |
acttatatgttatttcattaagtaagcgatctttaattacacagaaagttgcaatcaagaagatgaagacgcaagcaacaagagaatttctttctgaact |
37232145 |
T |
|
| Q |
300 |
gaaagtgttaacaagtgttcatcaccggaacctggtaaag-------catgt------tttgttttaccttttttattataaaagtaattgttgctttat |
386 |
Q |
| |
|
|||||| ||||||||||||| |||| ||||||||||| ||| | ||| ||||| |||||| |||||||| | |||||| |||||| |
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|
| T |
37232146 |
gaaagtcttaacaagtgttcgtcacttaaacctggtaaattttcaaacatataacatttttcttttagctttttctttataaaaatgattgtttctttat |
37232245 |
T |
|
| Q |
387 |
taactttcttcagtaactttgctgtttatattatattctttaatgtatcagtaattttgtaacctatatctatctattgttatgtccatataggtacact |
486 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
37232246 |
taactttcttcagtaactttgttgtttatactatattctctaatgtaatagtaattttgtaacctatatctatctgttgttatgtccatataggtacact |
37232345 |
T |
|
| Q |
487 |
tgattggatattgtgttgagggatttctattccttgtgtatgaatacatggaaaatggaaacttaaaccaacatctacataattcaggtgatattatta |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
37232346 |
tgattggatattgtgttgagggatttctatttcttgtgtatgaatacatggaaaatggaaacttaagccaacatctacataattcaggtgatattatta |
37232444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 367 - 619
Target Start/End: Original strand, 37217579 - 37217834
Alignment:
| Q |
367 |
aaaagtaattgttgctttattaactttcttcagtaactttgctgtttatattatattctttaatgtatcagtaattttgtaacctatatctatctattgt |
466 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| | | || |
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|
| T |
37217579 |
aaaagtaattgttgcattattaactttcttcagtaactttggtgtttatactatattctttaatgtaacagtaattttgtaacctatatctatatgtggt |
37217678 |
T |
|
| Q |
467 |
tatgtccatat----aggtacacttgattggatattgtgttgagggatttctattccttgtgtatgaatacatggaaaatggaaacttaaaccaacatct |
562 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
37217679 |
tatgtccatatatataggtacacttgattggatattgtgtcgagggatttctattccttgtgtatgaatacatggaaaatggaaacttaagccaacatct |
37217778 |
T |
|
| Q |
563 |
acataattcaggtgatattattataaacacattttgaatatttgttcttgatgatgt |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
37217779 |
acataattcaggtgatattattataaacaca-tttgaatatttgttcatgatgatgt |
37217834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 37 - 338
Target Start/End: Original strand, 37216944 - 37217253
Alignment:
| Q |
37 |
gtaatttctctcactttcaattgtatgtataaaatcataccatatacaggaaaggtgctatgtaccagaattcattaaatttgttttaaactcattctaa |
136 |
Q |
| |
|
||||||||| || ||| ||| |||| | ||||||||| ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
37216944 |
gtaatttctttctttttgaatggtatatttaaaatcattccaaatgcaggaaaggtgctatgaaccagaattcattaaatttgttttaaactcattctaa |
37217043 |
T |
|
| Q |
137 |
caagcatagtat-------ttg-gaataattttttcttgttgctaacaataaattccatgtgcctatttcaaattttatgttcttttgttaagtaagctg |
228 |
Q |
| |
|
|||||||||||| | | ||||||||||||||||||| || |||| ||||||||||||| |||||||||||||||| |||||||||||||| || |
|
|
| T |
37217044 |
caagcatagtatgatagtatagagaataattttttcttgttggtatcaatccattccatgtgcctgtttcaaattttatgtttttttgttaagtaaggtg |
37217143 |
T |
|
| Q |
229 |
tctttaattacacagaaaattgcaatcaagaagatgaagatgtaagcaacaagagaatttctttctgaactgaaagtgttaacaagtgttcatcaccgga |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
37217144 |
tctttaattacacagaaaattgcaatcaagaagatgaagatgcaagcaacaagagaatttctctctgaactgaaagttttaacaagtgttcatcactgga |
37217243 |
T |
|
| Q |
329 |
acctggtaaa |
338 |
Q |
| |
|
|||||||||| |
|
|
| T |
37217244 |
acctggtaaa |
37217253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 475 - 588
Target Start/End: Complemental strand, 37385631 - 37385518
Alignment:
| Q |
475 |
tataggtacacttgattggatattgtgttgagggatttctattccttgtgtatgaatacatggaaaatggaaacttaaaccaacatctacataattcagg |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || ||||||||||||| |||| |||||||| ||||||| |
|
|
| T |
37385631 |
tataggtacacttgattggatattgtgttgagggatctctattccttgtttatgaatacatcgacaatggaaacttaagccaaaatctacatgattcagg |
37385532 |
T |
|
| Q |
575 |
tgatattattataa |
588 |
Q |
| |
|
||| || ||||||| |
|
|
| T |
37385531 |
tgacataattataa |
37385518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 229 - 338
Target Start/End: Complemental strand, 37385829 - 37385720
Alignment:
| Q |
229 |
tctttaattacacagaaaattgcaatcaagaagatgaagatgtaagcaacaagagaatttctttctgaactgaaagtgttaacaagtgttcatcaccgga |
328 |
Q |
| |
|
|||| |||||||||||||| |||||| || |||||||||||| |||||||||| ||||||||| ||||||||||| | |||||||| ||||| ||| | | |
|
|
| T |
37385829 |
tcttcaattacacagaaaactgcaataaaaaagatgaagatgcaagcaacaagggaatttcttgctgaactgaaaatcttaacaagagttcaccactgca |
37385730 |
T |
|
| Q |
329 |
acctggtaaa |
338 |
Q |
| |
|
|||||||||| |
|
|
| T |
37385729 |
acctggtaaa |
37385720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 475 - 564
Target Start/End: Original strand, 37198245 - 37198334
Alignment:
| Q |
475 |
tataggtacacttgattggatattgtgttgagggatttctattccttgtgtatgaatacatggaaaatggaaacttaaaccaacatctac |
564 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||||| || |||||||| ||||||||||| || |||||||||||| ||||||||||| |
|
|
| T |
37198245 |
tataggtacgcttgatcggatactgtgttgagggatcccttttccttgtctatgaatacattgataatggaaacttaggccaacatctac |
37198334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 486 - 550
Target Start/End: Original strand, 37203257 - 37203321
Alignment:
| Q |
486 |
ttgattggatattgtgttgagggatttctattccttgtgtatgaatacatggaaaatggaaactt |
550 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||| ||||||||||| || ||||||||||| |
|
|
| T |
37203257 |
ttgattggatattgtgttgaaggttttctcttccttgtctatgaatacattgacaatggaaactt |
37203321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 337
Target Start/End: Original strand, 37197992 - 37198096
Alignment:
| Q |
233 |
taattacacagaaaattgcaatcaagaagatgaagatgtaagcaacaagagaatttctttctgaactgaaagtgttaacaagtgttcatcaccggaacct |
332 |
Q |
| |
|
|||||||||||||| |||||| || |||||| | ||| ||||||||| |||||||||| |||| |||| ||||| || ||||||||||| |||||| |
|
|
| T |
37197992 |
taattacacagaaagctgcaataaaaaagatggacatgaaagcaacaaaagaatttcttgctgagttgaaggtgttgacgcgtgttcatcacgtgaacct |
37198091 |
T |
|
| Q |
333 |
ggtaa |
337 |
Q |
| |
|
||||| |
|
|
| T |
37198092 |
ggtaa |
37198096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 550
Target Start/End: Original strand, 37315476 - 37315540
Alignment:
| Q |
486 |
ttgattggatattgtgttgagggatttctattccttgtgtatgaatacatggaaaatggaaactt |
550 |
Q |
| |
|
|||||||||||||| ||||| |||| || |||||||| |||||| |||| || ||||||||||| |
|
|
| T |
37315476 |
ttgattggatattgcgttgaaggatcacttttccttgtatatgaacacattgataatggaaactt |
37315540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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