View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19457_high_16 (Length: 218)

Name: NF19457_high_16
Description: NF19457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19457_high_16
NF19457_high_16
[»] chr8 (5 HSPs)
chr8 (1-218)||(4145312-4145529)
chr8 (1-218)||(4134510-4134727)
chr8 (1-218)||(4123965-4124182)
chr8 (1-218)||(4153315-4153532)
chr8 (7-218)||(4163674-4163891)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4145312 - 4145529
Alignment:
Q  1 ctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4145312 ctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttag 4145411  T
Q  101 aatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4145412 aatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattaca 4145511  T
Q  201 agatttccatttttgtga 218  Q
    ||||||||||||||||||    
T  4145512 agatttccatttttgtga 4145529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4134510 - 4134727
Alignment:
Q  1 ctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttag 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4134510 ctgtaactttattagatgcaattttcatcgatggaacagctgaatctgcagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttag 4134609  T
Q  101 aatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||    
T  4134610 aatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgataccatttggtttgttcaatattaca 4134709  T
Q  201 agatttccatttttgtga 218  Q
    |||||||||| |||||||    
T  4134710 agatttccatctttgtga 4134727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4123965 - 4124182
Alignment:
Q  1 ctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttag 100  Q
    |||| |||| ||||| ||||||| |||| | ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||| |     
T  4123965 ctgttacttggttagctgcaattctcattgttggaacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaa 4124064  T
Q  101 aatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattaca 200  Q
    ||||||||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| || ||    ||||||||||||||||| ||||||    
T  4124065 aatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattaca 4124164  T
Q  201 agatttccatttttgtga 218  Q
    ||||||||||||||||||    
T  4124165 agatttccatttttgtga 4124182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4153315 - 4153532
Alignment:
Q  1 ctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttag 100  Q
    |||| |||| ||||| ||||||| |||| | ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |||| ||||| |     
T  4153315 ctgttacttggttagctgcaattctcattgttggaacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccggaactgatatctctcaa 4153414  T
Q  101 aatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattaca 200  Q
    ||||||||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| || ||    ||||||||||||||||| |||| |    
T  4153415 aatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattata 4153514  T
Q  201 agatttccatttttgtga 218  Q
    | |||||||| |||||||    
T  4153515 aaatttccatctttgtga 4153532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 4163674 - 4163891
Alignment:
Q  7 ctttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaa 106  Q
    |||| |||||||||||| |||||| ||||||||| | ||| | |||||| |||||||||||||| ||||||| || |||||||||||| |||||||||||    
T  4163674 ctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactatcccaaattgttgatctagaattgatgtcacttagaatcaa 4163773  T
Q  107 gttccctgcatcatcaagtttagctgttgaatttgttgaa----ga--tgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattaca 200  Q
    ||| ||| ||||| |||||| |||||| |||||| |||||    ||  ||||||| ||||||||||||||||||| ||||||  ||||||||| ||||||    
T  4163774 gtttcctacatcaacaagttgagctgtggaatttattgaatttggacttgaaatgcttgttgaccaaatgatgctaccattttctttgttcaatattaca 4163873  T
Q  201 agatttccatttttgtga 218  Q
    ||||||||||||||||||    
T  4163874 agatttccatttttgtga 4163891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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