View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19457_high_2 (Length: 491)
Name: NF19457_high_2
Description: NF19457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19457_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 86 - 460
Target Start/End: Complemental strand, 25902107 - 25901733
Alignment:
| Q |
86 |
agttggttctaattttatagctcccacatataagttgagaagttgaaagaaatttaaacatttcttggtgacannnnnnnaaataaatgatgacagaaaa |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
25902107 |
agttggttctaattttatagctcccacatataagttgagaagttgaaagaaatttaaacatttctttgtgacatttttttaaataaatgatgacagaaaa |
25902008 |
T |
|
| Q |
186 |
atacagtagagtactcaaaatgaatagagtcaatatagctaaagaacaatgcggaagataaatggaattttttatagcatcaatgatcttgatttataca |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25902007 |
atacagtagagtactcaaaatgaatagagtcaatatagctaaagaacaatgcggaagataaatggaattttttatagcatcaatgatcttgatttataca |
25901908 |
T |
|
| Q |
286 |
gtttgtatcatgttgttgatccatagatcttaaaccagtctcatagaacctagctcatattgtcatgtcatgatcattcagccattctcatactgtcaac |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901907 |
gtttgtatcatgttgttgatccatagatcttaaaccagtctcatagaacctagctcatattgtcatgtcatgatcattcagccattctcatactgtcaac |
25901808 |
T |
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| Q |
386 |
atatctatgtaaattgaaaagaaaaaagtgtacccttttgaaattaatctgtgttgaaggatccaattgttattg |
460 |
Q |
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| T |
25901807 |
atatctatgtaaattgaaaagaaaaaagtgtacccttttgaaattaatctgtgttgaaggatccaattgttattg |
25901733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 282 - 415
Target Start/End: Complemental strand, 1511655 - 1511522
Alignment:
| Q |
282 |
tacagtttgtatcatgttgttgatccatagatcttaaaccagtctcatagaacctagctcatattgtcatgtcatgatcattcagccattctcatactgt |
381 |
Q |
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| T |
1511655 |
tacaatttgcatcatggtgtagatccagagatcttgcaccaatctcatagaacctagctcatactgccatgtcatgatcattcaaccattctcatactgt |
1511556 |
T |
|
| Q |
382 |
caacatatctatgtaaattgaaaagaaaaaagtg |
415 |
Q |
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| T |
1511555 |
caacatatctatgtaaaatgaaaagaaaaaagtg |
1511522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 8e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 172 - 415
Target Start/End: Original strand, 2437466 - 2437707
Alignment:
| Q |
172 |
atgatgacagaaaaatacagtagagtactcaaaatgaatagagtcaatatagctaaagaacaatgcggaagataaatggaattttttatagcatcaatga |
271 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| || ||| ||||||||| ||| |
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| T |
2437466 |
atgatgacagaaaaatacagtggagtactcaaaatgaatacagtcaatatagctaaagaacaatgaggaatataaatgaaaatttgtatagcatctctga |
2437565 |
T |
|
| Q |
272 |
tcttgatttatacagtttgtatcatgttgttgatccatagatcttaaaccagtctcatagaacctagctcatattgtcatgtcatgatcattcagccatt |
371 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||| |
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| T |
2437566 |
gcttgagttatacagtttgtatcatgttgtagatccatagatcttaaaccagtctcatagaacctagctcatactatcatgccatgatcattcagccatt |
2437665 |
T |
|
| Q |
372 |
ctcatactgtcaacatatctatgtaaattgaaaagaaaaaagtg |
415 |
Q |
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| T |
2437666 |
ctcatactgtcaacata--tatgtaaattgaaaagaaaaaagtg |
2437707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 202 - 415
Target Start/End: Original strand, 27537485 - 27537701
Alignment:
| Q |
202 |
aaaatgaatagagtcaa-tatagctaaagaacaatgcggaagataaatggaattttttatagcatcaatgatcttgatttatacagtttgtatcatgttg |
300 |
Q |
| |
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|||||||||| |||||| |||||||||||||||||| |||| | ||||| || ||| ||||||||| ||| ||||| |||||| |||| ||||||||| |
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| T |
27537485 |
aaaatgaatacagtcaaatatagctaaagaacaatgaggaatacaaatgaaaatttgtatagcatctgtgaccttgagatatacaatttgcatcatgttg |
27537584 |
T |
|
| Q |
301 |
ttgatccatagatcttaaaccagtctcatagaacctagctcatattgtcatgtcatgatcattcagccattctcatactgtcaacata--tctatgtaaa |
398 |
Q |
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| T |
27537585 |
tagatccagagatcttgcaccaatctcatagaacctatctcatactgtcatgccatgatcattcagccattctcatactgccaacatatctctatgtaaa |
27537684 |
T |
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| Q |
399 |
ttgaaaagaaaaaagtg |
415 |
Q |
| |
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|| ||||||||||||| |
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| T |
27537685 |
atgtaaagaaaaaagtg |
27537701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 10822026 - 10821972
Alignment:
| Q |
32 |
ttctaattgttagctttcatgtgagcagttggttaagtataagaatcatatataa |
86 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
10822026 |
ttctaattgtttgctttcatgtgagcagttggttaaatataacaatcatatataa |
10821972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 453
Target Start/End: Complemental strand, 52002752 - 52002716
Alignment:
| Q |
417 |
acccttttgaaattaatctgtgttgaaggatccaatt |
453 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
52002752 |
acccttttgaaattaatctgtgttgaaggatccaatt |
52002716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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