View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19457_high_3 (Length: 455)

Name: NF19457_high_3
Description: NF19457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19457_high_3
NF19457_high_3
[»] scaffold0699 (1 HSPs)
scaffold0699 (1-440)||(3192-3627)
[»] chr3 (3 HSPs)
chr3 (247-440)||(8427003-8427191)
chr3 (272-344)||(41553291-41553363)
chr3 (298-402)||(34825139-34825243)
[»] chr1 (1 HSPs)
chr1 (236-440)||(43351979-43352177)
[»] chr7 (5 HSPs)
chr7 (272-435)||(41237594-41237757)
chr7 (272-376)||(32734951-32735055)
chr7 (242-337)||(4270183-4270272)
chr7 (51-111)||(43615607-43615666)
chr7 (278-337)||(7332009-7332067)
[»] chr2 (2 HSPs)
chr2 (296-435)||(10742493-10742633)
chr2 (242-334)||(14565167-14565253)
[»] chr4 (2 HSPs)
chr4 (296-435)||(38863874-38864012)
chr4 (292-337)||(51894129-51894174)
[»] chr8 (3 HSPs)
chr8 (276-434)||(15823281-15823438)
chr8 (305-428)||(40646256-40646379)
chr8 (276-333)||(10611258-10611314)


Alignment Details
Target: scaffold0699 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: scaffold0699
Description:

Target: scaffold0699; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 3192 - 3627
Alignment:
Q  1 gttagcctttaaaatgcatcgacgctgcatcatcaagccgaagattgcgcggcgtaatgtacatgatattctttggatacaacatagagttggc-ttttt 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3192 gttagcctttaaaatgcatcgacgctgcatcatcaagtcgaagattgcacggcgtaatgtacatgatattctttggatacaacatagagttggctttttt 3291  T
Q  100 aaaatgcaatgttaatgttgcacactatttcaagccgtaggttattccnnnnnnncaacatgagttcacgattctagagatgtttttactggttccacaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  3292 aaaatgcaatgttaatgttgcacactatttcaagccgtaggttattcctttttttcaacatgagttcacgattctagagatgtttttactggttccacaa 3391  T
Q  200 tgtgcttcaagcatggtacttcccggttgagattaggtgccatttaagatgggaaagatgaatcctttcccatcccaccatgggaaatgtgttgttttga 299  Q
    |||||||| | |||    |||| | |||||||||||||||||||||||||| ||||| |||||| ||     | ||||||||||||| ||||||||||||    
T  3392 tgtgcttcgaacattacccttcgcagttgagattaggtgccatttaagatgagaaaggtgaatcatt-----ttccaccatgggaaaggtgttgttttga 3486  T
Q  300 ccatagatatattaataaatatattcaatggttgagatggattacctataaccttttgttaacattttggttttaaacattctacaaaaattgggacccc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  3487 ccatagatatattaataaatatattcaatggttgagatggattacctataaccttttgctaactttttggttttaaacattctacaaaaattgggacccc 3586  T
Q  400 acattatataggttaatgttattttatttaatgggcctatg 440  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  3587 acattatataggttaatgttattttttttaatgggcctatg 3627  T

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Target: chr3 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 247 - 440
Target Start/End: Complemental strand, 8427191 - 8427003
Alignment:
Q  247 gatgggaaagatgaatcctttcccatcccaccatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttgagatggattacct 346  Q
    |||||||||| ||||||||||||||||     |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8427191 gatgggaaaggtgaatcctttcccatc-----atgggaaaggtgttgttttaaccatagatatattaataaatatattcaatggttgagatgggttacct 8427097  T
Q  347 ataaccttttgttaacattttggttttaaacattctacaaaaattgggaccccacattatataggttaatgttattttatttaatgggcctatg 440  Q
    |||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8427096 ataaccttttgttaactttttagttttgaacaatctacaaaaattgggaccccacattatataggttaatgttgttttatttaatgggcctatg 8427003  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 41553363 - 41553291
Alignment:
Q  272 tcccaccatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttgagatggattac 344  Q
    ||||||||| ||||| ||| | |||| ||||| |||||||||||||| | |||||||||||||||||| ||||    
T  41553363 tcccaccataggaaaggtgatcttttaaccattgatatattaataaaaaaattcaatggttgagatgggttac 41553291  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 402
Target Start/End: Original strand, 34825139 - 34825243
Alignment:
Q  298 gaccatagatatattaataaatatattcaatggttgagatggattacctataaccttttgttaacattttggttttaaacattctacaaaaattgggacc 397  Q
    ||||||||||||||||||||||| ||| ||||| | |||| ||| |||||||||| |||  |||| ||||  |||| | | ||  ||||||||| |||||    
T  34825139 gaccatagatatattaataaataaattgaatggctaagattgatcacctataacccttttataacttttttattttcatcctttaacaaaaatttggacc 34825238  T
Q  398 ccaca 402  Q
    |||||    
T  34825239 ccaca 34825243  T

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Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 236 - 440
Target Start/End: Complemental strand, 43352177 - 43351979
Alignment:
Q  236 gtgccatttaagatgggaaagatgaatcctttcccatcccaccatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttgag 335  Q
    ||||||||||||||||||||| |||||| ||| |||     |||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43352177 gtgccatttaagatgggaaagttgaatcattttcca-----ccatgaaaaaggtgttgttttgaccatagatatattaataaatatattcaatggttgag 43352083  T
Q  336 atggattacctataaccttttgttaacattttggttttaaacattctacaaaaattgggaccccacattatataggttaatgttattttatttaatgggc 435  Q
    |||| |||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  43352082 atgggttacctataatcttttgttaactttttggttttaaaaattctacaaaaatt-ggaacccacattatataggttaatgttattttatttaatgggc 43351984  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 272 - 435
Target Start/End: Complemental strand, 41237757 - 41237594
Alignment:
Q  272 tcccaccatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttgagatggattacctataaccttttgttaacattttggtt 371  Q
    ||||| ||||||||||||| | |||||| | | |||||||||||||| |||||||||||||||||||||| || |   |||| ||| |||| ||||||||    
T  41237757 tcccatcatgggaaatgtgat-ttttgatctttgatatattaataaaaatattcaatggttgagatggatcacttgctacctattgctaactttttggtt 41237659  T
Q  372 ttaaacattctacaaaaattgggaccccacattata-taggttaatgttattttatttaatgggc 435  Q
    |||||  || ||||||||||  |||||||||||||| | | ||||||||||||||||||||||||    
T  41237658 ttaaaatttgtacaaaaattatgaccccacattatatttgtttaatgttattttatttaatgggc 41237594  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 272 - 376
Target Start/End: Complemental strand, 32735055 - 32734951
Alignment:
Q  272 tcccaccatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttgagatggattacctataaccttttgttaacattttggtt 371  Q
    ||||| ||||||||| ||| |||||||||||| |||||||||||||| | ||  |||||||||||||| ||||||  ||||| |||||||| ||||||||    
T  32735055 tcccatcatgggaaaggtgatgttttgaccattgatatattaataaaaaaatctaatggttgagatgggttacctccaacctattgttaactttttggtt 32734956  T
Q  372 ttaaa 376  Q
    |||||    
T  32734955 ttaaa 32734951  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 4270183 - 4270272
Alignment:
Q  242 tttaagatgggaaagatgaatcctttcccatcccaccatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttgagat 337  Q
    ||||| ||||||||| ||||||||||||||     |||||||||||||||| |||||||| |||||||| ||||||| | ||||||||||||||||    
T  4270183 tttaacatgggaaaggtgaatcctttccca-----ccatgggaaatgtgtt-ttttgaccttagatataataataaaaaaattcaatggttgagat 4270272  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 43615666 - 43615607
Alignment:
Q  51 ggcgtaatgtacatgatattctttggatacaacatagagttggctttttaaaatgcaatgt 111  Q
    |||||||||| |||||||||||| ||||||||| || |||| || ||||||||||||||||    
T  43615666 ggcgtaatgtgcatgatattctt-ggatacaacctaaagtttgccttttaaaatgcaatgt 43615607  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 337
Target Start/End: Complemental strand, 7332067 - 7332009
Alignment:
Q  278 catgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttgagat 337  Q
    ||||||||| ||||| |||||||| |||||||| ||||||| | ||||||||||||||||    
T  7332067 catgggaaaggtgtt-ttttgaccttagatataataataaaaaaattcaatggttgagat 7332009  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 296 - 435
Target Start/End: Original strand, 10742493 - 10742633
Alignment:
Q  296 ttgaccatagatatattaataaatatattcaatggttgagatggattacctataaccttttgttaacattttggttttaaacattctacaaaaattggga 395  Q
    |||| ||| |||||||||||||| ||||| | |||||||||||| |||| |  ||||| |||||||| ||||||||||||| |||  | |||||||| ||    
T  10742493 ttgatcattgatatattaataaaaatattgagtggttgagatgggttacttgcaacctattgttaactttttggttttaaaaattgaataaaaattgcga 10742592  T
Q  396 ccccacattatatagg-ttaatgttattttatttaatgggc 435  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  10742593 ccccacattatataggtttaattttattttatttaatgggc 10742633  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 334
Target Start/End: Complemental strand, 14565253 - 14565167
Alignment:
Q  242 tttaagatgggaaagatgaatcctttcccatcccaccatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttga 334  Q
    ||||| ||||||||| ||||||||||||||     |||||||||||||||| |||||||| |||||||| ||||||| | |||||||||||||    
T  14565253 tttaacatgggaaaggtgaatcctttccca-----ccatgggaaatgtgtt-ttttgaccttagatataataataaaaaaattcaatggttga 14565167  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 435
Target Start/End: Original strand, 38863874 - 38864012
Alignment:
Q  296 ttgaccatagatatattaataaatatattcaatggttgagatggattacctataaccttttgttaacattttggttttaaacattctacaaaaattggga 395  Q
    |||| ||| |||||||||||||| ||| | |||||||||||||||||||||  ||||  | |||||| ||||||||||||| | | || |||| ||| ||    
T  38863874 ttgatcattgatatattaataaaaataatgaatggttgagatggattacctgaaacc--tagttaactttttggttttaaaaactgtataaaatttgtga 38863971  T
Q  396 ccccacattatatagg-ttaatgttattttatttaatgggc 435  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  38863972 ccccacattacataggtttaatgttattttatttaatgggc 38864012  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 51894174 - 51894129
Alignment:
Q  292 tgttttgaccatagatatattaataaatatattcaatggttgagat 337  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||||    
T  51894174 tgttttgaccatagatataataatataaatattcaatggttgagat 51894129  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 276 - 434
Target Start/End: Original strand, 15823281 - 15823438
Alignment:
Q  276 accatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttgagatggattacctataaccttttgttaacattttggttttaa 375  Q
    ||||||||||||||| | ||| |||| | |||||||||||||| |  ||||||||||||||||||  || |   |||| ||| ||||  |||||||||||    
T  15823281 accatgggaaatgtgatcttt-gacctttgatatattaataaaaaatttcaatggttgagatggaccacttgctacctattgctaactctttggttttaa 15823379  T
Q  376 acattctacaaaaattgggaccccacattatatagg-ttaatgttattttatttaatggg 434  Q
    |  || ||||||||||  ||||||||||||||| || ||||||||| |||||||||||||    
T  15823380 aatttgtacaaaaattatgaccccacattatattggtttaatgtta-tttatttaatggg 15823438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 428
Target Start/End: Original strand, 40646256 - 40646379
Alignment:
Q  305 gatatattaataaatatattcaatggttgagatggattacctataaccttttgttaacattttggttttaaacattctacaaaaattgggaccccacatt 404  Q
    |||||||||||||| |||||||||||||||||| | | || | |||||| ||||| || ||||| ||||||| |||  |||||||||  ||||||||||     
T  40646256 gatatattaataaaaatattcaatggttgagattgttcacttgtaacctattgtt-actttttgtttttaaaaattgcacaaaaattatgaccccacatg 40646354  T
Q  405 atata-ggttaatgttattttattt 428  Q
    ||| | | |||||| ||||||||||    
T  40646355 ataaatgtttaatggtattttattt 40646379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 333
Target Start/End: Original strand, 10611258 - 10611314
Alignment:
Q  276 accatgggaaatgtgttgttttgaccatagatatattaataaatatattcaatggttg 333  Q
    |||||||||| |||||| |||||||| |||||||| ||||||| | ||||||||||||    
T  10611258 accatgggaagtgtgtt-ttttgaccttagatataataataaaaaaattcaatggttg 10611314  T

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