View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19457_low_15 (Length: 244)

Name: NF19457_low_15
Description: NF19457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19457_low_15
NF19457_low_15
[»] chr4 (7 HSPs)
chr4 (1-231)||(53679818-53680048)
chr4 (51-91)||(47645245-47645285)
chr4 (49-92)||(50721726-50721769)
chr4 (50-84)||(193587-193621)
chr4 (50-92)||(7632444-7632486)
chr4 (50-84)||(31574922-31574956)
chr4 (50-86)||(16019529-16019565)
[»] chr6 (1 HSPs)
chr6 (49-92)||(33551659-33551702)
[»] chr7 (3 HSPs)
chr7 (50-92)||(31445364-31445406)
chr7 (50-84)||(3683586-3683620)
chr7 (50-92)||(18505820-18505862)
[»] chr5 (4 HSPs)
chr5 (53-92)||(9168150-9168189)
chr5 (50-92)||(7287172-7287214)
chr5 (50-92)||(37172737-37172779)
chr5 (53-93)||(18692791-18692831)
[»] chr3 (3 HSPs)
chr3 (53-92)||(51672909-51672948)
chr3 (51-92)||(52417812-52417853)
chr3 (52-92)||(49021758-49021798)
[»] chr1 (4 HSPs)
chr1 (50-92)||(9987998-9988040)
chr1 (50-84)||(33076174-33076208)
chr1 (55-92)||(2206201-2206238)
chr1 (50-86)||(41677307-41677343)
[»] chr8 (1 HSPs)
chr8 (53-114)||(11180332-11180393)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 53679818 - 53680048
Alignment:
Q  1 atttacgaatatgaaactactaccgcgttattaataatatatactcttgtagagagagaaaataaaaatacaatgtgagtatgaaaaagaaataattgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  53679818 atttacgaatatgaaactactaccgcgttattaataatatatactcttatagagagagaaaataaaaatacaaagtgagtatgaaaaataaataattgtt 53679917  T
Q  101 caaatattatttcttaaatctatacccggagaatttagggtcttgaaactctattgcattattcattaaagttcactccactactatcaatatgtatatg 200  Q
    |||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  53679918 caaatattatttcttaaatctatacttgaagaatttagggtcttgaaactctattgcattattcattaaagttcactccactactatctatatgtatatg 53680017  T
Q  201 tctcgattctcttctcactcttcttcttttt 231  Q
    |||||||||||||||||||||||||||||||    
T  53680018 tctcgattctcttctcactcttcttcttttt 53680048  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 47645245 - 47645285
Alignment:
Q  51 agagagagaaaataaaaatacaatgtgagtatgaaaaagaa 91  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  47645245 agagagagaaaataaaaatacaatgtaagtatgaaagagaa 47645285  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 50721726 - 50721769
Alignment:
Q  49 gtagagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 92  Q
    ||||||||||||| |||||||| ||||||||||||||| |||||    
T  50721726 gtagagagagaaagtaaaaatataatgtgagtatgaaagagaaa 50721769  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 193621 - 193587
Alignment:
Q  50 tagagagagaaaataaaaatacaatgtgagtatga 84  Q
    ||||||||||||||||||||||| |||||||||||    
T  193621 tagagagagaaaataaaaatacagtgtgagtatga 193587  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 7632444 - 7632486
Alignment:
Q  50 tagagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 92  Q
    |||||||||||| |||||||| ||||||||||||||| |||||    
T  7632444 tagagagagaaagtaaaaatataatgtgagtatgaaagagaaa 7632486  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 31574922 - 31574956
Alignment:
Q  50 tagagagagaaaataaaaatacaatgtgagtatga 84  Q
    ||||||||||||||||||||| |||||||||||||    
T  31574922 tagagagagaaaataaaaatataatgtgagtatga 31574956  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 16019565 - 16019529
Alignment:
Q  50 tagagagagaaaataaaaatacaatgtgagtatgaaa 86  Q
    |||||||||||| |||||||| |||||||||||||||    
T  16019565 tagagagagaaagtaaaaatataatgtgagtatgaaa 16019529  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 33551702 - 33551659
Alignment:
Q  49 gtagagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 92  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  33551702 gtagagagagaatataaaaatacaatttgagtatgaaaaagaaa 33551659  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 31445406 - 31445364
Alignment:
Q  50 tagagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 92  Q
    |||||||||||| |||||||| |||||||||||||||||||||    
T  31445406 tagagagagaaagtaaaaatataatgtgagtatgaaaaagaaa 31445364  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 3683620 - 3683586
Alignment:
Q  50 tagagagagaaaataaaaatacaatgtgagtatga 84  Q
    ||||||||||||||||||||| |||||||||||||    
T  3683620 tagagagagaaaataaaaatataatgtgagtatga 3683586  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 18505862 - 18505820
Alignment:
Q  50 tagagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 92  Q
    |||||||||||| |||||| | |||||||||||||||||||||    
T  18505862 tagagagagaaactaaaaacataatgtgagtatgaaaaagaaa 18505820  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 9168150 - 9168189
Alignment:
Q  53 agagagaaaataaaaatacaatgtgagtatgaaaaagaaa 92  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  9168150 agagagaaaataaaaatataatgtgagtatgaaagagaaa 9168189  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 7287172 - 7287214
Alignment:
Q  50 tagagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 92  Q
    |||||||||||| |||||||| ||||||||||||||| |||||    
T  7287172 tagagagagaaagtaaaaatataatgtgagtatgaaagagaaa 7287214  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 37172737 - 37172779
Alignment:
Q  50 tagagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 92  Q
    |||||||||||| |||||| ||||||||||||||| |||||||    
T  37172737 tagagagagaaattaaaaacacaatgtgagtatgagaaagaaa 37172779  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 18692831 - 18692791
Alignment:
Q  53 agagagaaaataaaaatacaatgtgagtatgaaaaagaaat 93  Q
    ||||||||||||| |||| ||||||||||||||||| ||||    
T  18692831 agagagaaaataagaataaaatgtgagtatgaaaaaaaaat 18692791  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 51672948 - 51672909
Alignment:
Q  53 agagagaaaataaaaatacaatgtgagtatgaaaaagaaa 92  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  51672948 agagagagaataaaaatataatgtgagtatgaaaaagaaa 51672909  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 52417853 - 52417812
Alignment:
Q  51 agagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 92  Q
    ||||||||||| |||||||||||||||| ||| |||||||||    
T  52417853 agagagagaaagtaaaaatacaatgtgaatataaaaaagaaa 52417812  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 49021798 - 49021758
Alignment:
Q  52 gagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 92  Q
    |||||| |||||||||||| ||||||||||||| |||||||    
T  49021798 gagagacaaaataaaaatataatgtgagtatgagaaagaaa 49021758  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 9988040 - 9987998
Alignment:
Q  50 tagagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 92  Q
    |||||||||||| |||||||| ||||||||||||||| |||||    
T  9988040 tagagagagaaagtaaaaatataatgtgagtatgaaagagaaa 9987998  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 33076208 - 33076174
Alignment:
Q  50 tagagagagaaaataaaaatacaatgtgagtatga 84  Q
    ||||||||||||||||||||| |||||||||||||    
T  33076208 tagagagagaaaataaaaatataatgtgagtatga 33076174  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 2206201 - 2206238
Alignment:
Q  55 agagaaaataaaaatacaatgtgagtatgaaaaagaaa 92  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  2206201 agagaaaataaaaatataatatgagtatgaaaaagaaa 2206238  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 41677307 - 41677343
Alignment:
Q  50 tagagagagaaaataaaaatacaatgtgagtatgaaa 86  Q
    |||||||| |||||||||||| |||||||||||||||    
T  41677307 tagagagataaaataaaaatataatgtgagtatgaaa 41677343  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 11180393 - 11180332
Alignment:
Q  53 agagagaaaataaaaatacaatgtgagtatgaaaaagaaataattgttcaaatattatttct 114  Q
    ||||||| ||||| |||| ||||||||||||| | |||||||| ||| ||||||| ||||||    
T  11180393 agagagagaataagaatataatgtgagtatgagagagaaataactgtacaaatatcatttct 11180332  T

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